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[175388_at]

Description AU113672_rc /REP_DB=TREMBL Accession /GB=AU113672 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk710d1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 27      4grp_high_8_8 > 63      6grp_highest_nonorm > 93      6grp_total > 87      4grp_total > 48      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 225.6
(-3)
P 		225.3
(-3)
P 		369.4
(3)
P 		305.5
(0.3)
P 		144
B 339.2
(3)
P 		265.2
(-2.6)
P 		298.7
(-0.1)
P 		259.9
(-3)
P 		79
C 321.4
(-0)
P 		310.3
(-0.7)
P 		368.5
(3)
P 		275.1
(-3)
P 		93
avr 295.4
(-0.8) 		266.9
(-3) 		345.5
(3) 		280.2
(-2) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 636
1 2 3 4 5 6 range
A 310.7
(-2.5)
P 		289.8
(-3)
P 		410.5
(0)
P 		369
(-1)
P 		530.8
(3)
P 		504.5
(2.3)
P 		241
B 422.8
(-1.3)
P 		507.5
(-0.5)
P 		243.9
(-3)
P 		425.6
(-1.3)
P 		589.5
(0.3)
P 		880.2
(3)
P 		636
C 311.8
(-2.5)
P 		348.7
(-2.1)
P 		259.2
(-3)
P 		540.7
(-0.2)
P 		419.4
(-1.4)
P 		857.5
(3)
P 		598
avr 348.4
(-2.4) 		382
(-2) 		304.5
(-3) 		445.1
(-1.1) 		513.2
(-0.2) 		747.4
(3) 		443
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 82.1
(1.3)
P 		48.9
(-2.5)
P 		96.6
(3)
P 		44.7
(-3)
P 		52
B 108.2
(3)
P 		65.5
(-1.9)
P 		69.2
(-1.4)
P 		55.4
(-3)
P 		53
C 106.4
(1.4)
P 		89.2
(0.1)
P 		128.4
(3)
P 		46.4
(-3)
P 		82
avr 98.9
(3) 		67.9
(-0.7) 		98.1
(2.9) 		48.8
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 57.3
(-3)
P 		103.1
(-0.3)
P 		89.4
(-1.1)
P 		93.6
(-0.9)
P 		160.2
(3)
P 		122.8
(0.8)
P 		103
B 147.1
(-1)
P 		168.9
(-0.6)
P 		59.2
(-3)
P 		112.7
(-1.8)
P 		239.5
(1)
P 		328.2
(3)
P 		269
C 115.6
(-1.7)
P 		106.4
(-1.9)
P 		66
(-3)
P 		108.7
(-1.8)
P 		135.7
(-1.1)
P 		287
(3)
P 		221
avr 106.7
(-1.8) 		126.1
(-1.1) 		71.5
(-3) 		105
(-1.8) 		178.5
(0.7) 		246
(3) 		175
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175388_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20549
Sequence Type Exemplar sequence
Representative Public ID AU113672 NCBI
Target Description AU113672_rc /REP_DB=TREMBL Accession /GB=AU113672 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk710d1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T21B10.5 ENSEMBL cdna:known chromosome:CEL140:II:8938960:8940398:-1 gene:T21B10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8939044-8939324(-) 100.0 100.0
Public Domain and Genome References
Ensembl T21B10.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92695 Hypothetical protein T21B10.5 [Caenorhabditis elegans] ref|NP_495902.1| T21B10.5 [Caenorhabditis elegans] 1.0E-160
blast CAE59764 Hypothetical protein CBG03216 [Caenorhabditis briggsae] 1.0E-112
blast XP_344848 PREDICTED: similar to PR-domain zinc finger protein 9 [Rattus norvegicus] 7.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR001214 EMBL-EBI Nuclear protein SET 7.7E-16
Sequence
Target Sequence 
>C. ELEGANS:175388_AT
tcaattctcgttttaaattcatgcaaaacaatgacatgaattgttacctagcttttattt
gtattttaagttcttgaggttatcctgattggatgccgaaacgttttaatgtgtattata
atagttaagtgtgctaatttcacctcaaaatcattttctttctgttaacaatttccaatt
ttcagtgtcggtgctcaaagataatcttctttttaccctcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATTCTCGTTTTAAATTCATGCA 126 633 23 Antisense
GACATGAATTGTTACCTAGCTTTTA 583 369 55 Antisense
TGTTACCTAGCTTTTATTTGTATTT 669 561 64 Antisense
TTTTAAGTTCTTGAGGTTATCCTGA 619 673 86 Antisense
GAGGTTATCCTGATTGGATGCCGAA 460 403 98 Antisense
GGATGCCGAAACGTTTTAATGTGTA 95 513 113 Antisense
AAGTGTGCTAATTTCACCTCAAAAT 526 159 149 Antisense
AAATCATTTTCTTTCTGTTAACAAT 625 115 170 Antisense
TTTCCAATTTTCAGTGTCGGTGCTC 540 669 194 Antisense
GTGTCGGTGCTCAAAGATAATCTTC 118 487 207 Antisense
AGATAATCTTCTTTTTACCCTCATC 48 65 221 Antisense
Sequence Source Affymetrix Proprietary Database