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[175387_at]

Description AV199485_rc /REP_DB=TREMBL Accession /GB=AV199485 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk547a3 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 53      4grp_high_8_8 > 37      6grp_total > 20      4grp_total > 43      6grp_cgc > 73      6grp_high1_sub > 03      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 73.2
(0.6)
P 		62.2
(-2.8)
P 		80.9
(3)
P 		61.4
(-3)
P 		20
B 46.1
(-2)
P 		121.5
(3)
P 		31.8
(-3)
M 		54.4
(-1.5)
A 		90
C 57.6
(-3)
P 		87.6
(3)
P 		58.9
(-2.7)
P 		81.4
(1.8)
P 		30
avr 59
(-2.7) 		90.4
(3) 		57.2
(-3) 		65.7
(-1.5) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 36.9
(0.1)
A 		48.2
(1.2)
P 		66.4
(3)
P 		65.6
(2.9)
P 		63.7
(2.7)
P 		4.5
(-3)
A 		62
B 30.6
(-2.8)
P 		81.6
(3)
P 		29.9
(-2.9)
A 		46.8
(-0.9)
P 		28.7
(-3)
P 		50.1
(-0.6)
P 		53
C 13.7
(-3)
A 		42.2
(-0.1)
P 		71.8
(3)
P 		54.2
(1.2)
A 		14.1
(-3)
A 		51
(0.9)
P 		58
avr 27.1
(-3) 		57.3
(3) 		56
(2.7) 		55.5
(2.6) 		35.5
(-1.3) 		35.2
(-1.4) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 26.7
(3)
P 		13.5
(-1.5)
P 		21.2
(1.1)
P 		9
(-3)
P 		18
B 14.7
(-1.1)
P 		30
(3)
P 		7.4
(-3)
M 		11.6
(-1.9)
A 		23
C 19.1
(-0.2)
P 		25.2
(3)
P 		20.5
(0.5)
P 		13.7
(-3)
P 		12
avr 20.2
(1.6) 		22.9
(3) 		16.4
(-0.4) 		11.4
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 6.8
(-1.1)
A 		17.1
(2.3)
P 		14.5
(1.4)
P 		16.6
(2.1)
P 		19.2
(3)
P 		1.1
(-3)
A 		18
B 10.7
(-2)
P 		27.2
(3)
P 		7.3
(-3)
A 		12.4
(-1.5)
P 		11.7
(-1.7)
P 		18.7
(0.4)
P 		20
C 5.1
(-2.8)
A 		12.9
(0.6)
P 		18.3
(3)
P 		10.9
(-0.2)
A 		4.6
(-3)
A 		17.1
(2.5)
P 		14
avr 7.5
(-3) 		19.1
(3) 		13.4
(0.1) 		13.3
(0) 		11.8
(-0.8) 		12.3
(-0.5) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175387_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21873
Sequence Type Exemplar sequence
Representative Public ID AV199485 NCBI
Target Description AV199485_rc /REP_DB=TREMBL Accession /GB=AV199485 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk547a3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV199485
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV199485 AV199485_rc /REP_DB=TREMBL Accession /GB=AV199485 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk547a3 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074348 11/11 Negative Strand Matching Probes A 
SNAP00000027056 11/11 Negative Strand Matching Probes None
GENEFINDER00000027069 11/11 Negative Strand Matching Probes None
Y75B12B.2.4 11/11 Negative Strand Matching Probes None
Y75B12B.2.2 11/11 Negative Strand Matching Probes A 
Y75B12B.2.1 11/11 Negative Strand Matching Probes A 
Y75B12B.2.3 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15189587-15189915(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175387_AT
tccttgaagttctcgtctgggaacttctctccgtagatggattctcctccagttccgttc
ccgcgggtgaagtctcctccctggatcatgaattctgggatgatacgatggaacttggat
cccttgaagtggagtggctttccggactttccgactcccttctcaccagtgcaaagagca
cggaagttctcagcggtttttggaacaatatcgttgtagagcccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTTGAAGTTCTCGTCTGGGAACT 165 581 34 Antisense
TCTGGGAACTTCTCTCCGTAGATGG 554 603 49 Antisense
TCCGTAGATGGATTCTCCTCCAGTT 213 593 63 Antisense
CTCCTCCCTGGATCATGAATTCTGG 380 235 107 Antisense
GATACGATGGAACTTGGATCCCTTG 506 423 135 Antisense
GGATCCCTTGAAGTGGAGTGGCTTT 647 511 150 Antisense
TGAAGTGGAGTGGCTTTCCGGACTT 597 567 158 Antisense
CTCCCTTCTCACCAGTGCAAAGAGC 602 233 188 Antisense
GAGCACGGAAGTTCTCAGCGGTTTT 702 387 209 Antisense
TTCTCAGCGGTTTTTGGAACAATAT 659 689 220 Antisense
GGAACAATATCGTTGTAGAGCCCAT 115 529 235 Antisense
Sequence Source Affymetrix Proprietary Database