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[175386_at]

Description AU116238_rc /REP_DB=TREMBL Accession /GB=AU116238 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk742c7 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 60      6grp_total > 61      4grp_total > 57      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 63.8
(-1.4)
P 		148.1
(2.1)
P 		169.2
(3)
P 		24.7
(-3)
A 		145
B 48.4
(-1.3)
P 		135.9
(2)
P 		164
(3)
P 		2
(-3)
A 		162
C 41
(-3)
P 		82.4
(-1.5)
P 		202.9
(3)
P 		43.7
(-2.9)
A 		162
avr 51.1
(-1.9) 		122.1
(0.8) 		178.7
(3) 		23.5
(-3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 119.1
(-1.6)
P 		114.1
(-1.8)
P 		226
(3)
P 		223.4
(2.9)
P 		102.6
(-2.3)
P 		86
(-3)
M 		140
B 169.1
(-0.2)
P 		162.3
(-0.5)
P 		259.3
(3)
P 		212.5
(1.3)
P 		128.5
(-1.7)
P 		92.2
(-3)
P 		167
C 145.8
(-1)
P 		195.7
(1)
P 		94.9
(-3)
P 		246
(3)
P 		157.2
(-0.5)
P 		114
(-2.2)
P 		151
avr 144.7
(-0.8) 		157.4
(-0.2) 		193.4
(1.4) 		227.3
(3) 		129.4
(-1.5) 		97.4
(-3) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 23.2
(-0.1)
P 		32.1
(1.2)
P 		44.2
(3)
P 		3.6
(-3)
A 		41
B 15.4
(-0.6)
P 		33.6
(2.3)
P 		38
(3)
P 		0.4
(-3)
A 		38
C 13.6
(-2.4)
P 		23.7
(-1.5)
P 		70.7
(3)
P 		7.4
(-3)
A 		63
avr 17.4
(-1.3) 		29.8
(0.3) 		51
(3) 		3.8
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 22
(-2.8)
P 		40.6
(0.3)
P 		49.2
(1.7)
P 		56.7
(3)
P 		31
(-1.3)
P 		20.9
(-3)
M 		36
B 58.8
(2.1)
P 		54
(1.1)
P 		63
(3)
P 		56.3
(1.6)
P 		52.2
(0.7)
P 		34.4
(-3)
P 		29
C 54
(2)
P 		59.7
(3)
P 		24.2
(-3)
P 		49.5
(1.3)
P 		50.9
(1.5)
P 		38.1
(-0.7)
P 		36
avr 44.9
(0.6) 		51.4
(2.3) 		45.5
(0.7) 		54.2
(3) 		44.7
(0.5) 		31.1
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175386_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20615
Sequence Type Exemplar sequence
Representative Public ID AU116238 NCBI
Target Description AU116238_rc /REP_DB=TREMBL Accession /GB=AU116238 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk742c7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063595(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063595 NCBI Caenorhabditis elegans C06C3.4 (C06C3.4) mRNA, complete cds. 11/11 A 
GENEFINDER00000008816 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9373509:9375760:1 11/11 None
C06C3.4 ENSEMBL cdna:known chromosome:CEL140:II:9373509:9375760:1 gene:C06C3.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000008818 4/11 Cross Hyb Matching Probes None
C06C3.9 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9374333-9374734(+) 100.0 100.0
chrII:9377719-9378122(+) 95.7 95.7
Public Domain and Genome References
Gene Title
Ensembl C06C3.4
Entrez Gene 174485 Entrez gene
SwissProt Q17717 EMBL-EBI
WormBase CE32568 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA85317 Hypothetical protein C06C3.4 [Caenorhabditis elegans] ref|NP_495996.2| C06C3.4 [Caenorhabditis elegans] 0.0
blast CAE65947 Hypothetical protein CBG11124 [Caenorhabditis briggsae] 2.0E-89
blast T19004 hypothetical protein C06C3.9 - Caenorhabditis elegans 4.0E-63
blast T19004 hypothetical protein C06C3.9 - Caenorhabditis elegans 3.0E-62
Sequence
Target Sequence 
>C. ELEGANS:175386_AT
cgtcgctgatttggtgtaccgaggatggcaatgttggcatcaatacgacttgaaacgtac
tctagtggatcttctttggaaaactgagatatgtccattttcttccactgattttccagt
tatcacgagaaaaaccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTCGCTGATTTGGTGTACCGAGGA 540 245 53 Antisense
ACCGAGGATGGCAATGTTGGCATCA 249 87 70 Antisense
GCAATGTTGGCATCAATACGACTTG 124 321 80 Antisense
ACGACTTGAAACGTACTCTAGTGGA 638 91 97 Antisense
GAAACGTACTCTAGTGGATCTTCTT 701 357 104 Antisense
GTACTCTAGTGGATCTTCTTTGGAA 698 457 109 Antisense
CTAGTGGATCTTCTTTGGAAAACTG 268 1 114 Antisense
TGAGATATGTCCATTTTCTTCCACT 514 567 137 Antisense
CATTTTCTTCCACTGATTTTCCAGT 603 215 148 Antisense
TCCACTGATTTTCCAGTTATCACGA 170 589 156 Antisense
TTCCAGTTATCACGAGAAAAACCGA 37 699 166 Antisense
Sequence Source Affymetrix Proprietary Database