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[175385_at]

Description AV185302_rc /REP_DB=TREMBL Accession /GB=AV185302 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk676c6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 19      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 20      6grp_total > 29      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 786
1 2 3 4 range
A 1244.7
(3)
P 		649.5
(-3)
P 		1143.2
(2)
P 		882.1
(-0.7)
P 		595
B 1072.4
(-0.5)
P 		814.5
(-3)
P 		1082.6
(-0.4)
P 		1435.6
(3)
P 		621
C 1249.8
(3)
P 		1168.7
(1.6)
P 		898.5
(-3)
P 		940
(-2.3)
P 		351
avr 1189
(3) 		877.6
(-3) 		1041.4
(0.2) 		1085.9
(1) 		311

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1199
1 2 3 4 5 6 range
A 816.3
(-2.1)
P 		1185
(2.5)
P 		743.1
(-3)
P 		777.9
(-2.6)
P 		1229.2
(3)
P 		964.8
(-0.3)
P 		486
B 1457
(3)
P 		862
(-2.3)
P 		944.9
(-1.6)
P 		784.1
(-3)
P 		1245.2
(1.1)
P 		799.1
(-2.9)
P 		673
C 1846.9
(3)
P 		1028.7
(-1.1)
P 		772.3
(-2.4)
P 		647.6
(-3)
P 		1115.5
(-0.7)
P 		831.2
(-2.1)
P 		1199
avr 1373.4
(3) 		1025.2
(-0.3) 		820.1
(-2.2) 		736.5
(-3) 		1196.6
(1.3) 		865
(-1.8) 		637
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 324
1 2 3 4 range
A 453.2
(3)
P 		141
(-2.8)
P 		298.9
(0.1)
P 		129.1
(-3)
P 		324
B 342
(3)
P 		201.2
(-3)
P 		250.9
(-0.9)
P 		305.9
(1.5)
P 		141
C 413.7
(3)
P 		336
(1.2)
P 		313.2
(0.6)
P 		158.5
(-3)
P 		255
avr 403
(3) 		226.1
(-2.2) 		287.7
(-0.4) 		197.8
(-3) 		205

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 554
1 2 3 4 5 6 range
A 150.5
(-3)
P 		421.4
(3)
P 		161.8
(-2.7)
P 		197.3
(-2)
P 		370.9
(1.9)
P 		234.9
(-1.1)
P 		271
B 507
(3)
P 		286.9
(-1.4)
P 		229.5
(-2.6)
P 		207.7
(-3)
P 		505.9
(3)
P 		298
(-1.2)
P 		299
C 684.6
(3)
P 		313.9
(-1)
P 		196.6
(-2.3)
P 		130.2
(-3)
P 		361
(-0.5)
P 		278.2
(-1.4)
P 		554
avr 447.4
(3) 		340.7
(0.6) 		196
(-2.6) 		178.4
(-3) 		412.6
(2.2) 		270.4
(-0.9) 		269
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175385_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21855
Sequence Type Exemplar sequence
Representative Public ID AV185302 NCBI
Target Description AV185302_rc /REP_DB=TREMBL Accession /GB=AV185302 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk676c6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV185302
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV185302 AV185302_rc /REP_DB=TREMBL Accession /GB=AV185302 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk676c6 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10946580-10946842(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175385_AT
cctcaagggaggtcactcctgtgtttgtgttcatgtgcatgtttttatgtttttttttgc
agttttcaactgttggtgacgaatgagcgtgggggtttttattactttattctgtatgct
catttcacaaaataacgttcaatgtatctctatcatctttttttttccgaaaatataacc
aaattcttccccattcccctctctcgaaagtaacaaatccacttgtctgtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCAAGGGAGGTCACTCCTGTGTT 118 269 13 Antisense
ACTCCTGTGTTTGTGTTCATGTGCA 277 99 27 Antisense
GTTCATGTGCATGTTTTTATGTTTT 169 445 41 Antisense
GCAGTTTTCAACTGTTGGTGACGAA 329 297 71 Antisense
GGTGACGAATGAGCGTGGGGGTTTT 627 497 87 Antisense
GGTTTTTATTACTTTATTCTGTATG 141 507 106 Antisense
TATTCTGTATGCTCATTTCACAAAA 443 663 120 Antisense
AATAACGTTCAATGTATCTCTATCA 385 171 143 Antisense
ATGTATCTCTATCATCTTTTTTTTT 667 47 154 Antisense
TTCCCCTCTCTCGAAAGTAACAAAT 8 699 206 Antisense
AAGTAACAAATCCACTTGTCTGTAT 656 157 220 Antisense
Sequence Source Affymetrix Proprietary Database