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[175383_at]

Description AU114611_rc /REP_DB=TREMBL Accession /GB=AU114611 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk721c4 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 22      6grp_total > 22      4grp_total > 60      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 207.4
(2.9)
P 		156.7
(0.3)
P 		209.7
(3)
P 		92.2
(-3)
M 		118
B 182.6
(0.1)
P 		132.5
(-1.3)
P 		283.1
(3)
P 		72.9
(-3)
A 		210
C 206.7
(3)
P 		202.9
(2.7)
P 		199.8
(2.5)
P 		128.2
(-3)
M 		79
avr 198.9
(1.6) 		164
(-0) 		230.9
(3) 		97.8
(-3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 213
1 2 3 4 5 6 range
A 252.1
(3)
P 		215.5
(1.7)
P 		238.7
(2.5)
P 		205.3
(1.4)
P 		243.6
(2.7)
P 		78.9
(-3)
A 		173
B 274.5
(2.5)
P 		291
(3)
P 		292.2
(3)
P 		244.5
(1.5)
P 		221.3
(0.8)
P 		95
(-3)
P 		197
C 252.2
(3)
P 		244.2
(2.7)
P 		231
(2.2)
P 		165.4
(-0.4)
P 		156
(-0.8)
P 		98.9
(-3)
P 		153
avr 259.6
(3) 		250.2
(2.7) 		254
(2.8) 		205.1
(1.1) 		207
(1.1) 		90.9
(-3) 		169
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 75.5
(3)
P 		34
(-1)
P 		54.8
(1)
P 		13.5
(-3)
M 		62
B 58.2
(2.1)
P 		32.7
(-0.9)
P 		65.6
(3)
P 		15.5
(-3)
A 		50
C 68.4
(2.9)
P 		58.3
(1.6)
P 		69.6
(3)
P 		21.6
(-3)
M 		48
avr 67.4
(3) 		41.7
(-0.1) 		63.3
(2.5) 		16.9
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 46.5
(-0.1)
P 		76.6
(3)
P 		52
(0.4)
P 		52.1
(0.4)
P 		73.5
(2.7)
P 		19.2
(-3)
A 		57
B 95.5
(2.9)
P 		96.9
(3)
P 		70.9
(0.5)
P 		64.8
(-0.1)
P 		89.9
(2.3)
P 		35.4
(-3)
P 		62
C 93.5
(3)
P 		74.5
(1.1)
P 		58.8
(-0.4)
P 		33.3
(-3)
P 		50.5
(-1.3)
P 		33.1
(-3)
P 		60
avr 78.5
(2.5) 		82.7
(3) 		60.6
(0.5) 		50.1
(-0.7) 		71.3
(1.7) 		29.2
(-3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175383_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21048
Sequence Type Exemplar sequence
Representative Public ID AU114611 NCBI
Target Description AU114611_rc /REP_DB=TREMBL Accession /GB=AU114611 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk721c4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066647(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066647 NCBI Caenorhabditis elegans K01B6.3 (K01B6.3) mRNA, complete cds. 11/11 A 
K01B6.3.2 ENSEMBL cdna:known chromosome:CEL140:III:9300118:9303758:1 gene:K01B6.3 11/11 None
K01B6.3.1 ENSEMBL cdna:known chromosome:CEL140:III:9300121:9303758:1 gene:K01B6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010285 3/11 Cross Hyb Matching Probes None
GENEFINDER00000010289 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9303404-9303744(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K01B6.3
Entrez Gene 176309 Entrez gene
SwissProt P34491 EMBL-EBI
WormBase CE27190 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80130 Hypothetical protein K01B6.3 [Caenorhabditis elegans] ref|NP_499048.1| K01B6.3 [Caenorhabditis elegans] sp|P34491|YMM3_CAEEL Hypothetical protein K01B6.3 in chromosome III 0.0
blast CAE65250 Hypothetical protein CBG10134 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499048.1 4 83-105,120-142,154-176,191-213
K01B6.3.2 4 83-105,120-142,154-176,191-213
K01B6.3.1 4 83-105,120-142,154-176,191-213
Sequence
Target Sequence 
>C. ELEGANS:175383_AT
gtgtcgaagaggtggatatggagtttgatgaggacgatgattcacatccagaagaacacg
aaccattggtttaatcagtcgtcagatctttcatagctgctcactatccagaaaagaagc
tttcatatttgttttgagaatagtgtccccctctaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTCGAAGAGGTGGATATGGAGTT 48 485 92 Antisense
GATATGGAGTTTGATGAGGACGATG 291 425 106 Antisense
CAGAAGAACACGAACCATTGGTTTA 442 205 140 Antisense
GAACCATTGGTTTAATCAGTCGTCA 601 345 151 Antisense
ATCAGTCGTCAGATCTTTCATAGCT 589 29 165 Antisense
GTCAGATCTTTCATAGCTGCTCACT 186 467 172 Antisense
CTTTCATAGCTGCTCACTATCCAGA 319 223 179 Antisense
GCTGCTCACTATCCAGAAAAGAAGC 372 297 187 Antisense
AAGAAGCTTTCATATTTGTTTTGAG 183 153 205 Antisense
TTTGTTTTGAGAATAGTGTCCCCCT 271 667 219 Antisense
TTTGAGAATAGTGTCCCCCTCTAAA 309 665 224 Antisense
Sequence Source Affymetrix Proprietary Database