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[175381_at] zinc finger protein

Description AV176939_rc /REP_DB=TREMBL Accession /GB=AV176939 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk520g6 : 3prime end, single read.
Cluster 6grp_total > 87      4grp_total > 08      6grp_cgc > 49      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 38.8
(-3)
A 		60.6
(-1.1)
A 		106.5
(3)
A 		98.1
(2.3)
A 		68
B 48.5
(-3)
A 		80.4
(0.6)
A 		65.9
(-1)
A 		101.2
(3)
P 		53
C 62.5
(-1.4)
A 		49.7
(-2)
A 		29.9
(-3)
A 		148.7
(3)
P 		119
avr 49.9
(-3) 		63.6
(-1.8) 		67.4
(-1.4) 		116
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1151
1 2 3 4 5 6 range
A 28.4
(-3)
A 		43.1
(-2.9)
A 		54
(-2.8)
A 		82.7
(-2.7)
A 		541.2
(0.2)
P 		982.7
(3)
P 		954
B 51.8
(-2.9)
A 		34.1
(-3)
A 		86.1
(-2.7)
A 		160
(-2.3)
P 		456.1
(-0.6)
P 		1099.3
(3)
P 		1065
C 45.2
(-3)
A 		88.5
(-2.8)
A 		93.4
(-2.7)
A 		106.8
(-2.7)
P 		367.7
(-1.3)
P 		1179
(3)
P 		1134
avr 41.8
(-3) 		55.2
(-2.9) 		77.8
(-2.8) 		116.5
(-2.6) 		455
(-0.6) 		1087
(3) 		1045
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 14.1
(-2.6)
A 		13.2
(-3)
A 		27.9
(3)
A 		14.4
(-2.5)
A 		15
B 15.5
(-2.8)
A 		19.8
(1.3)
A 		15.3
(-3)
A 		21.6
(3)
P 		6
C 20.7
(1.2)
A 		14.3
(-1.4)
A 		10.4
(-3)
A 		25.1
(3)
P 		15
avr 16.8
(-1.7) 		15.8
(-3) 		17.9
(-0.3) 		20.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 405
1 2 3 4 5 6 range
A 5.2
(-3)
A 		15.3
(-2.7)
A 		11.7
(-2.8)
A 		21
(-2.6)
A 		163.3
(1.1)
P 		239.3
(3)
P 		234
B 18
(-2.9)
A 		11.4
(-3)
A 		20.9
(-2.9)
A 		42.4
(-2.5)
P 		185.3
(-0.4)
P 		409.9
(3)
P 		399
C 16.7
(-3)
A 		27
(-2.8)
A 		23.8
(-2.9)
A 		21.5
(-2.9)
P 		119
(-1.4)
P 		394.7
(3)
P 		378
avr 13.3
(-3) 		17.9
(-2.9) 		18.8
(-2.9) 		28.3
(-2.7) 		155.9
(-0.4) 		348
(3) 		335
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175381_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20580
Sequence Type Exemplar sequence
Representative Public ID AV176939 NCBI
Target Description AV176939_rc /REP_DB=TREMBL Accession /GB=AV176939 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk520g6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063642(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063642 NCBI Caenorhabditis elegans Muscle EXcess family member (mex-6) (mex-6) mRNA, complete cds. 11/11 None
AH6.5 ENSEMBL cdna:known chromosome:CEL140:II:9524085:9526273:1 gene:AH6.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9525905-9526240(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol mex-6
Ensembl AH6.5
Entrez Gene 174504 Entrez gene
SwissProt Q09436 EMBL-EBI
WormBase CE26846 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88088 Hypothetical protein AH6.5 [Caenorhabditis elegans] ref|NP_496043.1| Muscle EXcess family member (mex-6) [Caenorhabditis elegans] sp|Q09436|MEX6_CAEEL Zinc finger protein mex-6 0.0
blast T18624 hypothetical protein AH6.5 - Caenorhabditis elegans 0.0
blast CAB05310 Hypothetical protein W02A2.7 [Caenorhabditis elegans] ref|NP_502566.1| Muscle EXcess family member (mex-5) [Caenorhabditis elegans] sp|Q9XUB2|MEX5_CAEEL Zinc finger protein mex-5 1.0E-171
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 7.9E-8
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 2.9E-11
Sequence
Target Sequence 
>C. ELEGANS:175381_AT
taaaagtaatccggtctcagctttttttcaaaatttttatcagctttcatgtgattttac
ccctttttcccttcatcatagtttatccttatcatcattttttatcaagttcctccaatt
gcccgttcaacattcctggtcccaaaatagctagtcactgctaatctaatatagaatgtt
gacagcagtccctttaccctcaaatatgtcagccagctttttagctgttcagccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAAAGTAATCCGGTCTCAGCTTTT 628 639 45 Antisense
AGCTTTCATGTGATTTTACCCCTTT 333 79 86 Antisense
CCTTTTTCCCTTCATCATAGTTTAT 387 267 106 Antisense
CATAGTTTATCCTTATCATCATTTT 631 213 121 Antisense
CATCATTTTTTATCAAGTTCCTCCA 435 213 137 Antisense
GTTCAACATTCCTGGTCCCAAAATA 572 443 169 Antisense
TCCTGGTCCCAAAATAGCTAGTCAC 505 591 178 Antisense
AGCTAGTCACTGCTAATCTAATATA 194 77 193 Antisense
GAATGTTGACAGCAGTCCCTTTACC 342 331 218 Antisense
TACCCTCAAATATGTCAGCCAGCTT 424 645 239 Antisense
GCCAGCTTTTTAGCTGTTCAGCCGA 582 279 256 Antisense
Sequence Source Affymetrix Proprietary Database