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[175380_at]

Description AV176918_rc /REP_DB=TREMBL Accession /GB=AV176918 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk520e3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 18      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 70      6grp_total > 07      4grp_total > 12      6grp_highest_sub > De      6grp_cgc > 12      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 576
1 2 3 4 range
A 270.7
(-1.7)
P 		193.5
(-2.6)
P 		152
(-3)
P 		717.2
(3)
P 		565
B 361.3
(0.6)
P 		177.3
(-2.4)
P 		141.7
(-3)
P 		512.5
(3)
P 		371
C 296.8
(-1)
P 		205.7
(-2.6)
P 		180.6
(-3)
P 		537
(3)
P 		356
avr 309.6
(-0.9) 		192.2
(-2.5) 		158.1
(-3) 		588.9
(3) 		431

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 422.7
(3)
P 		302.5
(0.3)
P 		218.4
(-1.7)
P 		160.1
(-3)
P 		210.3
(-1.9)
P 		226.5
(-1.5)
P 		263
B 434.1
(3)
P 		293.7
(-0.4)
P 		204
(-2.6)
P 		200.7
(-2.7)
P 		222.7
(-2.1)
P 		186.9
(-3)
P 		247
C 442.4
(3)
P 		315.7
(0.3)
P 		178.8
(-2.6)
P 		186.8
(-2.4)
P 		269.7
(-0.7)
P 		159.9
(-3)
P 		283
avr 433.1
(3) 		304
(-0.1) 		200.4
(-2.6) 		182.5
(-3) 		234.2
(-1.8) 		191.1
(-2.8) 		251
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 98.5
(2.4)
P 		42
(-2.8)
P 		39.7
(-3)
P 		105
(3)
P 		65
B 115.2
(3)
P 		43.8
(-2.2)
P 		32.8
(-3)
P 		109.2
(2.6)
P 		82
C 98.3
(3)
P 		59.2
(-3)
P 		62.9
(-2.4)
P 		90.5
(1.8)
P 		39
avr 104
(3) 		48.3
(-2.7) 		45.1
(-3) 		101.6
(2.8) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 77.9
(0.3)
P 		107.6
(3)
P 		47.6
(-2.4)
P 		40.6
(-3)
P 		63.5
(-0.9)
P 		55.1
(-1.7)
P 		67
B 151
(3)
P 		97.8
(-0.1)
P 		49.5
(-3)
P 		53.2
(-2.8)
P 		90.5
(-0.6)
P 		69.7
(-1.8)
P 		102
C 164
(3)
P 		96.3
(-0.2)
P 		45.5
(-2.6)
P 		37.6
(-3)
P 		87.3
(-0.6)
P 		53.5
(-2.2)
P 		126
avr 131
(3) 		100.6
(0.9) 		47.5
(-2.7) 		43.8
(-3) 		80.4
(-0.5) 		59.4
(-1.9) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175380_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20565
Sequence Type Exemplar sequence
Representative Public ID AV176918 NCBI
Target Description AV176918_rc /REP_DB=TREMBL Accession /GB=AV176918 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk520e3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064220(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064220 NCBI Caenorhabditis elegans Suppressor of Pal-1 family member (sop-2) (sop-2) mRNA, complete cds. 11/11 None
C50E10.4 ENSEMBL cdna:known chromosome:CEL140:II:12339847:12344668:1 gene:C50E10.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12344330-12344630(+) 82.33 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sop-2
Ensembl C50E10.4
Entrez Gene 174874 Entrez gene
SwissProt Q965H3 EMBL-EBI
WormBase CE32334 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_496621 Suppressor of Pal-1 family member (sop-2) [Caenorhabditis elegans] gb|AAK73863.2| Suppressor of pal-1 protein 2 [Caenorhabditis elegans] sp|Q965H3|SOP2_CAEEL Polycomb protein sop-2 (Suppressor of pal-1 protein 2) 0.0
blast T33498 hypothetical protein C50E10.4 - Caenorhabditis elegans 0.0
blast B88331 protein C44C11.2 [imported] - Caenorhabditis elegans pir||T32954 hypothetical protein C44C11.2 - Caenorhabditis elegans (fragment) 2.0E-46
Sequence
Target Sequence 
>C. ELEGANS:175380_AT
ttttctgacatttcaagctcttgcatattgactcctaccgctttacccattcctcgttac
ctaatttggacctacttagatgatagaaaactttcagcagttttctaatttttaataatt
ttaattttttgtaagttgattgcaatttctttaactattaaattcccctttgatactcac
agagacatgttttatattctataatcaatcgatttttgtcataatacccgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCTGACATTTCAAGCTCTTGCA 257 677 47 Antisense
CAAGCTCTTGCATATTGACTCCTAC 260 185 60 Antisense
TTACCTAATTTGGACCTACTTAGAT 200 455 103 Antisense
ATTTGGACCTACTTAGATGATAGAA 501 13 110 Antisense
AGATGATAGAAAACTTTCAGCAGTT 688 65 124 Antisense
GTAAGTTGATTGCAATTTCTTTAAC 67 461 177 Antisense
GATTGCAATTTCTTTAACTATTAAA 290 435 184 Antisense
ATTAAATTCCCCTTTGATACTCACA 376 13 203 Antisense
TTCCCCTTTGATACTCACAGAGACA 645 697 209 Antisense
CACAGAGACATGTTTTATATTCTAT 624 195 224 Antisense
ATCGATTTTTGTCATAATACCCGTT 620 33 254 Antisense
Sequence Source Affymetrix Proprietary Database