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[175379_at]

Description AV183324_rc /REP_DB=TREMBL Accession /GB=AV183324 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk649f6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 90      4grp_highest_8_8 > 59      4grp_high_8_8 > 26      6grp_highest_nonorm > 74      6grp_total > 01      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 555
1 2 3 4 range
A 1015.5
(3)
P 		921.9
(1.1)
P 		723.5
(-3)
P 		948.4
(1.6)
P 		292
B 1241.6
(3)
P 		787.7
(-1.9)
P 		686.8
(-3)
P 		836.8
(-1.4)
P 		555
C 977.5
(3)
P 		883
(0.4)
P 		830.5
(-1.1)
P 		760.5
(-3)
P 		217
avr 1078.2
(3) 		864.2
(-0.9) 		746.9
(-3) 		848.6
(-1.2) 		331

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 767
1 2 3 4 5 6 range
A 765.1
(-0)
P 		824.2
(0.6)
P 		599.2
(-1.8)
P 		481.5
(-3)
P 		1051.5
(3)
P 		544.4
(-2.3)
P 		570
B 694.8
(0.7)
P 		953.1
(3)
P 		284.4
(-3)
P 		877.3
(2.3)
P 		782.3
(1.5)
P 		523.4
(-0.9)
P 		669
C 646.4
(-1.2)
P 		900.6
(3)
P 		539.6
(-3)
P 		696.5
(-0.4)
P 		744.8
(0.4)
P 		663.6
(-0.9)
P 		361
avr 702.1
(0.3) 		892.6
(3) 		474.4
(-3) 		685.1
(0) 		859.5
(2.5) 		577.1
(-1.5) 		418
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 268
1 2 3 4 range
A 369.7
(3)
P 		200.1
(-1.4)
P 		189.1
(-1.7)
P 		138.8
(-3)
P 		231
B 395.9
(3)
P 		194.6
(-2.1)
P 		159.1
(-3)
P 		178.3
(-2.5)
P 		237
C 323.6
(3)
P 		253.9
(0.9)
P 		289.5
(2)
P 		128.2
(-3)
P 		195
avr 363.1
(3) 		216.2
(-1.1) 		212.6
(-1.2) 		148.4
(-3) 		215

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 141
(-2.4)
P 		293.1
(2.3)
P 		130.5
(-2.7)
P 		122.1
(-3)
P 		317.3
(3)
P 		132.5
(-2.7)
P 		195
B 241.8
(1.2)
P 		317.2
(3)
P 		69.1
(-3)
P 		232.4
(0.9)
P 		317.8
(3)
P 		195.2
(0)
P 		249
C 239.6
(1.5)
P 		274.8
(3)
P 		137.3
(-3)
P 		140.1
(-2.9)
P 		241
(1.5)
P 		222.2
(0.7)
P 		138
avr 207.5
(0.1) 		295
(3) 		112.3
(-3) 		164.9
(-1.3) 		292
(2.9) 		183.3
(-0.7) 		183
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175379_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22433
Sequence Type Exemplar sequence
Representative Public ID AV183324 NCBI
Target Description AV183324_rc /REP_DB=TREMBL Accession /GB=AV183324 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk649f6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029815(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029815 NCBI Caenorhabditis elegans ZK1193.5c (ZK1193.5) mRNA, complete cds. 11/11 None
ZK1193.5c ENSEMBL cdna:known chromosome:CEL140:X:427062:429526:-1 gene:ZK1193.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180398 3 1 NM_001029815 175379_at (11), 185625_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:427110-427390(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK1193.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO91696 Hypothetical protein ZK1193.5c [Caenorhabditis elegans] ref|NP_001024986.1| ZK1193.5c [Caenorhabditis elegans] 1.0E-171
blast AAO91694 Hypothetical protein ZK1193.5a [Caenorhabditis elegans] ref|NP_001024984.1| ZK1193.5a [Caenorhabditis elegans] 1.0E-167
blast T27710 hypothetical protein ZK1193.5 - Caenorhabditis elegans 1.0E-162
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 3.9999998989515E-5
Pfam IPR001356 EMBL-EBI Homeobox 1.9E-4
Sequence
Target Sequence 
>C. ELEGANS:175379_AT
ttaatttccttctttctttcaatcaacaatttcccatcgctttctttgtctctttcaatg
ttccacagatcacatagttttaatggtttttcaatgtttcccttcttaccgtcacactac
tttccaatattattcatcttaattttatgtctaccacttccaatatcaatcttgcccacc
gttttctcaattttttttgtcaaatttaaacttttctctgcttttcagttgtgcttcagc
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAATTTCCTTCTTTCTTTCAATCA 327 685 22 Antisense
TTTCCTTCTTTCTTTCAATCAACAA 27 671 26 Antisense
TTCAATCAACAATTTCCCATCGCTT 132 685 39 Antisense
GTCTCTTTCAATGTTCCACAGATCA 185 471 69 Antisense
GTTCCACAGATCACATAGTTTTAAT 254 441 81 Antisense
TTTCCAATATTATTCATCTTAATTT 74 669 142 Antisense
CTTAATTTTATGTCTACCACTTCCA 51 223 159 Antisense
GTCTACCACTTCCAATATCAATCTT 622 469 170 Antisense
ATTTAAACTTTTCTCTGCTTTTCAG 134 15 225 Antisense
ACTTTTCTCTGCTTTTCAGTTGTGC 370 103 231 Antisense
TCTGCTTTTCAGTTGTGCTTCAGCC 378 609 238 Antisense
Sequence Source Affymetrix Proprietary Database