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[175378_s_at]

Description AU115610_rc /REP_DB=TREMBL Accession /GB=AU115610 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk734f4 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 50      6grp_total > 41      4grp_total > 50      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 50.4
(-2.4)
A 		180.3
(3)
P 		110.7
(0.1)
P 		36.2
(-3)
A 		144
B 53.9
(-2.3)
P 		193.6
(3)
P 		162.7
(1.8)
P 		35.8
(-3)
A 		158
C 49.7
(-1.3)
P 		135.8
(1.9)
P 		165.8
(3)
P 		4.5
(-3)
A 		161
avr 51.3
(-1.9) 		169.9
(3) 		146.4
(2) 		25.5
(-3) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 117.5
(1.4)
P 		129.2
(2.1)
P 		123.5
(1.7)
P 		146.5
(3)
P 		92.6
(0)
P 		37
(-3)
A 		110
B 92.3
(-1.2)
P 		117.3
(0.2)
P 		165
(3)
P 		165.6
(3)
P 		122.4
(0.5)
P 		62
(-3)
M 		104
C 111.4
(0.5)
P 		144.5
(2.4)
P 		155.8
(3)
P 		140.1
(2.1)
P 		98.4
(-0.2)
P 		49.4
(-3)
P 		106
avr 107.1
(0.4) 		130.3
(1.8) 		148.1
(2.8) 		150.7
(3) 		104.5
(0.3) 		49.5
(-3) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 18.4
(-0.7)
A 		39.1
(3)
P 		28.9
(1.2)
P 		5.3
(-3)
A 		34
B 17.2
(-1.6)
P 		47.8
(3)
P 		37.7
(1.5)
P 		7.6
(-3)
A 		40
C 16.4
(-1.4)
P 		39
(1)
P 		57.8
(3)
P 		0.8
(-3)
A 		57
avr 17.3
(-1) 		42
(3) 		41.5
(2.9) 		4.6
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 21.7
(-0.9)
P 		46
(3)
P 		26.9
(-0.1)
P 		37.2
(1.6)
P 		27.9
(0.1)
P 		9
(-3)
A 		37
B 32.1
(-1)
P 		39
(0.6)
P 		40.1
(0.8)
P 		43.9
(1.7)
P 		49.7
(3)
P 		23.1
(-3)
M 		27
C 41.3
(2.4)
P 		44.1
(3)
P 		39.6
(2)
P 		28.2
(-0.5)
P 		31.8
(0.3)
P 		16.5
(-3)
P 		28
avr 31.7
(0.5) 		43
(3) 		35.5
(1.3) 		36.4
(1.5) 		36.5
(1.5) 		16.2
(-3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175378_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22432
Sequence Type Exemplar sequence
Representative Public ID AU115610 NCBI
Target Description AU115610_rc /REP_DB=TREMBL Accession /GB=AU115610 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk734f4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075991(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075991 NCBI Caenorhabditis elegans F53B1.6 (F53B1.6) mRNA, complete cds. 11/11 A 
F53B1.6 ENSEMBL cdna:known chromosome:CEL140:X:2114623:2118251:-1 gene:F53B1.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022991 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2114683-2115009(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53B1.6
Entrez Gene 180526 Entrez gene
SwissProt Q20700 EMBL-EBI
WormBase CE31180 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4289 subtilase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52649 Hypothetical protein F53B1.6 [Caenorhabditis elegans] ref|NP_508392.2| F53B1.6 [Caenorhabditis elegans] 0.0
blast T16445 hypothetical protein F53B1.5 - Caenorhabditis elegans 7.0E-52
blast CAE68351 Hypothetical protein CBG14084 [Caenorhabditis briggsae] 1.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 2.3E-18
Sequence
Target Sequence 
>C. ELEGANS:175378_S_AT
gagagaggaagacatcgaccatccaatgatgtggcaaccattatcagcggatgttattgc
gcaaagagactctagaaggcgctatggttgcatagtggattggatcgttcccggccacgg
cagcatgttccaagttacaactaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGAGGAAGACATCGACCATCCA 422 395 92 Antisense
GAGGAAGACATCGACCATCCAATGA 347 405 96 Antisense
TCGACCATCCAATGATGTGGCAACC 475 599 106 Antisense
GATGTGGCAACCATTATCAGCGGAT 114 409 119 Antisense
GCAACCATTATCAGCGGATGTTATT 539 319 125 Antisense
GGATGTTATTGCGCAAAGAGACTCT 75 515 140 Antisense
GAGACTCTAGAAGGCGCTATGGTTG 602 393 157 Antisense
AAGGCGCTATGGTTGCATAGTGGAT 492 161 167 Antisense
CATAGTGGATTGGATCGTTCCCGGC 51 215 182 Antisense
CCACGGCAGCATGTTCCAAGTTACA 514 271 206 Antisense
GCAGCATGTTCCAAGTTACAACTAA 212 313 211 Antisense
Sequence Source Affymetrix Proprietary Database