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[175377_at]

Description AV200834_rc /REP_DB=TREMBL Accession /GB=AV200834 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk581d8 : 3prime end, single read.
Cluster 6grp_total > 99      4grp_total > 25      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 8.6
(-2.7)
A 		53.3
(3)
A 		6
(-3)
A 		7.9
(-2.8)
A 		47
B 4.6
(-3)
A 		15.1
(-1.4)
A 		43.4
(3)
A 		32.9
(1.4)
A 		39
C 7
(-2.8)
A 		8.7
(-2.7)
A 		4.8
(-3)
A 		76.9
(3)
A 		72
avr 6.7
(-3) 		25.7
(0.5) 		18.1
(-0.9) 		39.2
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1491
1 2 3 4 5 6 range
A 33.8
(-2.9)
A 		5.1
(-3)
A 		5
(-3)
A 		3.7
(-3)
A 		1329.8
(3)
P 		980
(1.4)
P 		1326
B 4.2
(-3)
A 		4
(-3)
A 		34.4
(-2.9)
A 		5.5
(-3)
A 		1493.8
(3)
P 		1325.4
(2.3)
P 		1490
C 3.3
(-3)
A 		26.6
(-2.9)
A 		23.7
(-2.9)
A 		7
(-3)
A 		1369.7
(3)
P 		1293.2
(2.7)
P 		1366
avr 13.8
(-3) 		11.9
(-3) 		21
(-2.9) 		5.4
(-3) 		1397.8
(3) 		1199.5
(2.1) 		1392
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.1
(-1.9)
A 		11.6
(3)
A 		1.6
(-2.8)
A 		1.2
(-3)
A 		10
B 1.5
(-3)
A 		3.7
(-1.5)
A 		10.1
(3)
A 		7
(0.8)
A 		9
C 2.3
(-2.7)
A 		2.5
(-2.6)
A 		1.7
(-3)
A 		13
(3)
A 		11
avr 2.3
(-3) 		5.9
(1.5) 		4.5
(-0.3) 		7.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 606
1 2 3 4 5 6 range
A 6.2
(-2.9)
A 		1.8
(-3)
A 		1.1
(-3)
A 		0.9
(-3)
A 		401.3
(3)
P 		238.6
(0.6)
P 		400
B 1.5
(-3)
A 		1.3
(-3)
A 		8.3
(-2.9)
A 		1.5
(-3)
A 		606.9
(3)
P 		494.2
(1.9)
P 		606
C 1.2
(-3)
A 		8.1
(-2.9)
A 		6
(-2.9)
A 		1.4
(-3)
A 		443.2
(3)
P 		432.9
(2.9)
P 		442
avr 3
(-3) 		3.7
(-3) 		5.1
(-3) 		1.3
(-3) 		483.8
(3) 		388.6
(1.8) 		483
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175377_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22431
Sequence Type Exemplar sequence
Representative Public ID AV200834 NCBI
Target Description AV200834_rc /REP_DB=TREMBL Accession /GB=AV200834 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk581d8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000039700 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3441840:3445184:1 11/11 None
SNAP00000039693 ENSEMBL cdna:SNAP chromosome:CEL140:X:3444801:3445184:1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3444893-3445195(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52655 Hypothetical protein ZK813.3 [Caenorhabditis elegans] ref|NP_508593.2| ZK813.3 [Caenorhabditis elegans] 7.0E-50
Sequence
Target Sequence 
>C. ELEGANS:175377_AT
tatgtacagtcacggatgctccaccatcgagaagaaagatcagcttccaactctcactca
cgttcacacgaatcatctgaattgaaacctgctggctttggacgtcctcaacctgggcca
atcagaagatcaagcgaatcacgcgaatcacgtgaaagaagaaaaaacaacacaccaaat
ccactcaatcagcagccgacaggaaacggttttgtcccgagaagatcgtcgcactcaaat
tctgatagccgcgacagaagcagagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGTACAGTCACGGATGCTCCACC 466 655 17 Antisense
AAGAAAGATCAGCTTCCAACTCTCA 463 153 48 Antisense
GTTCACACGAATCATCTGAATTGAA 262 443 78 Antisense
ATCATCTGAATTGAAACCTGCTGGC 366 27 88 Antisense
TCCTCAACCTGGGCCAATCAGAAGA 323 591 121 Antisense
GATCAAGCGAATCACGCGAATCACG 175 421 144 Antisense
TCCACTCAATCAGCAGCCGACAGGA 526 587 196 Antisense
GCAGCCGACAGGAAACGGTTTTGTC 136 313 208 Antisense
TCCCGAGAAGATCGTCGCACTCAAA 429 597 231 Antisense
GTCGCACTCAAATTCTGATAGCCGC 378 475 244 Antisense
TGATAGCCGCGACAGAAGCAGAGAA 298 565 259 Antisense
Sequence Source Affymetrix Proprietary Database