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[175376_at]

Description AU115946_rc /REP_DB=TREMBL Accession /GB=AU115946 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk738g2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 64      6grp_total > 84      4grp_total > 0      6grp_highest_sub > 04_05_06      6grp_high1_sub > In      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 405
1 2 3 4 range
A 752
(2.9)
P 		543.7
(-3)
P 		663.2
(0.4)
P 		757
(3)
P 		213
B 646.3
(-2.9)
P 		668.6
(-2.5)
P 		641.3
(-3)
P 		948.6
(3)
P 		307
C 694
(-1)
P 		627.9
(-3)
P 		828.6
(3)
P 		722.1
(-0.2)
P 		201
avr 697.4
(-0.4) 		613.4
(-3) 		711
(-0) 		809.2
(3) 		196

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 534
1 2 3 4 5 6 range
A 418.1
(-3)
P 		647.3
(0.3)
P 		808.1
(2.6)
P 		633.2
(0.1)
P 		837.8
(3)
P 		662.3
(0.5)
P 		420
B 713.9
(-0.5)
P 		858.7
(3)
P 		613.6
(-3)
P 		857.6
(3)
P 		801.8
(1.6)
P 		843.4
(2.6)
P 		245
C 553.5
(-3)
P 		729.8
(-0.3)
P 		673.2
(-1.2)
P 		952
(3)
P 		727.1
(-0.4)
P 		907.8
(2.3)
P 		399
avr 561.8
(-3) 		745.3
(1.4) 		698.3
(0.2) 		814.3
(3) 		788.9
(2.4) 		804.5
(2.8) 		253
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 273.8
(3)
P 		118
(-2.7)
P 		173.4
(-0.7)
P 		110.8
(-3)
P 		163
B 206.1
(3)
P 		165.1
(-1.3)
P 		148.6
(-3)
P 		202.1
(2.6)
P 		58
C 229.7
(0.9)
P 		180.5
(-0.9)
P 		288.8
(3)
P 		121.8
(-3)
P 		167
avr 236.5
(3) 		154.5
(-2.4) 		203.6
(0.8) 		144.9
(-3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 77.1
(-3)
P 		230.2
(2.2)
P 		176
(0.4)
P 		160.6
(-0.1)
P 		252.8
(3)
P 		161.3
(-0.1)
P 		176
B 248.4
(0.4)
P 		285.8
(1.6)
P 		149
(-3)
P 		227.1
(-0.3)
P 		325.7
(3)
P 		314.5
(2.6)
P 		177
C 205.2
(-1.5)
P 		222.7
(-0.7)
P 		171.3
(-3)
P 		191.5
(-2.1)
P 		235.3
(-0.1)
P 		303.9
(3)
P 		133
avr 176.9
(-2.3) 		246.2
(1.6) 		165.4
(-3) 		193.1
(-1.4) 		271.3
(3) 		259.9
(2.4) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175376_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20371
Sequence Type Exemplar sequence
Representative Public ID AU115946 NCBI
Target Description AU115946_rc /REP_DB=TREMBL Accession /GB=AU115946 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk738g2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059876(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059876 NCBI Caenorhabditis elegans T19A6.3 (T19A6.3) mRNA, complete cds. 11/11 None
T19A6.3 ENSEMBL cdna:known chromosome:CEL140:I:8407043:8408597:1 gene:T19A6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8408205-8408485(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19A6.3
Entrez Gene 172625 Entrez gene
SwissProt Q9XXN3 EMBL-EBI
WormBase CE28962 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16513 Hypothetical protein T19A6.3 [Caenorhabditis elegans] ref|NP_492277.1| T19A6.3 [Caenorhabditis elegans] 2.0E-65
blast CAE60433 Hypothetical protein CBG04041 [Caenorhabditis briggsae] 8.0E-54
blast EAA44023 ENSANGP00000025036 [Anopheles gambiae str. PEST] ref|XP_315436.2| ENSANGP00000025036 [Anopheles gambiae str. PEST] 3.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492277.1 2 42-60,75-97
T19A6.3 2 42-60,75-97
Sequence
Target Sequence 
>C. ELEGANS:175376_AT
taattctgctccataatactatcgaggtgtacacccaagattctctttcattaaaaaata
attgatcttggtgaggttttcctcccgtagtttgattatttttgccaccgtttcctactt
ttctcttgttccgacttatatgtgtaaaatatggtgattcaaattgtatttatttttcct
atttccccgcccattcatggagtcgtgttttttgtttgaatttcgtgactcgaatagctc
aaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTCTGCTCCATAATACTATCGA 194 635 17 Antisense
ATAATACTATCGAGGTGTACACCCA 87 23 29 Antisense
GTGTACACCCAAGATTCTCTTTCAT 245 487 43 Antisense
GATCTTGGTGAGGTTTTCCTCCCGT 663 417 80 Antisense
TCCTCCCGTAGTTTGATTATTTTTG 598 593 96 Antisense
CTTTTCTCTTGTTCCGACTTATATG 678 221 134 Antisense
CTCTTGTTCCGACTTATATGTGTAA 43 231 139 Antisense
GCCCATTCATGGAGTCGTGTTTTTT 178 287 205 Antisense
CATGGAGTCGTGTTTTTTGTTTGAA 621 209 212 Antisense
TTTTGTTTGAATTTCGTGACTCGAA 560 677 226 Antisense
TTCGTGACTCGAATAGCTCAAAAAA 508 687 238 Antisense
Sequence Source Affymetrix Proprietary Database