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[175375_at]

Description AV181657_rc /REP_DB=TREMBL Accession /GB=AV181657 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk623c1 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 87      6grp_total > 97      4grp_total > 08      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 50.8
(-3)
A 		60.6
(-2.5)
P 		53.8
(-2.8)
M 		165.5
(3)
P 		115
B 29.1
(-3)
A 		43.8
(-1.9)
A 		93.3
(1.8)
P 		109.3
(3)
P 		80
C 32.6
(-3)
A 		47.9
(-2.2)
A 		54.4
(-1.8)
P 		142.8
(3)
P 		110
avr 37.5
(-3) 		50.8
(-2.2) 		67.2
(-1.2) 		139.2
(3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 44.5
(-3)
A 		48.2
(-2.7)
P 		80.8
(-0.4)
P 		65
(-1.5)
P 		127.1
(3)
P 		88.5
(0.2)
P 		83
B 85.9
(-1.5)
P 		39.6
(-3)
A 		65.5
(-2.2)
M 		81.2
(-1.7)
P 		126.1
(-0.3)
P 		230.9
(3)
P 		191
C 80.6
(-2)
P 		52.6
(-2.8)
P 		45.2
(-3)
A 		129.7
(-0.7)
P 		107.3
(-1.3)
P 		264
(3)
P 		219
avr 70.3
(-2) 		46.8
(-3) 		63.8
(-2.3) 		92
(-1.2) 		120.2
(-0) 		194.5
(3) 		148
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 18.5
(-0.1)
A 		13.1
(-3)
P 		14.1
(-2.5)
M 		24.2
(3)
P 		11
B 9.3
(-3)
A 		10.8
(-2.4)
A 		21.6
(2.3)
P 		23.3
(3)
P 		14
C 10.8
(-3)
A 		13.8
(-1.6)
A 		19
(0.7)
P 		24.1
(3)
P 		13
avr 12.9
(-2.8) 		12.6
(-3) 		18.2
(-0) 		23.9
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 8.2
(-3)
A 		17.1
(-1.2)
P 		17.6
(-1.1)
P 		16.5
(-1.4)
P 		38.4
(3)
P 		21.6
(-0.3)
P 		30
B 29.9
(-1.6)
P 		13.2
(-3)
A 		15.9
(-2.8)
M 		21.5
(-2.3)
P 		51.3
(0.1)
P 		86.1
(3)
P 		73
C 29.9
(-1.6)
P 		16.1
(-2.6)
P 		11.5
(-3)
A 		26.1
(-1.9)
P 		34.7
(-1.2)
P 		88.4
(3)
P 		77
avr 22.7
(-2.1) 		15.5
(-2.9) 		15
(-3) 		21.4
(-2.2) 		41.5
(0.2) 		65.4
(3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175375_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20462
Sequence Type Exemplar sequence
Representative Public ID AV181657 NCBI
Target Description AV181657_rc /REP_DB=TREMBL Accession /GB=AV181657 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk623c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058347(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058347 NCBI Caenorhabditis elegans Y65B4BR.8 (Y65B4BR.8) mRNA, complete cds. 11/11 None
GENEFINDER00000036993 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:534461:535197:1 9/11 None
SNAP00000036978 ENSEMBL cdna:SNAP chromosome:CEL140:I:534632:535197:1 9/11 None
Y65B4BR.8 ENSEMBL cdna:known chromosome:CEL140:I:534461:535284:1 gene:Y65B4BR.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:534935-535274(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y65B4BR.8
Entrez Gene 171645 Entrez gene
SwissProt Q9BL54 EMBL-EBI
WormBase CE27304 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29961 Hypothetical protein Y65B4BR.8 [Caenorhabditis elegans] ref|NP_490748.1| Y65B4BR.8 [Caenorhabditis elegans] 1.0E-102
blast CAE61289 Hypothetical protein CBG05113 [Caenorhabditis briggsae] 5.0E-74
blast AAK29961 Hypothetical protein Y65B4BR.8 [Caenorhabditis elegans] ref|NP_490748.1| Y65B4BR.8 [Caenorhabditis elegans] 1.0E-72
blast CAE61289 Hypothetical protein CBG05113 [Caenorhabditis briggsae] 8.0E-53
blast XP_583816 PREDICTED: similar to Y65B4BR.8 isoform 1 [Bos taurus] 2.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR010492 EMBL-EBI Partner of SLD five, PSF3 1.9E-83
Pfam IPR010492 EMBL-EBI Partner of SLD five, PSF3 7.3E-59
Sequence
Target Sequence 
>C. ELEGANS:175375_AT
tctccacacttacacagcgattaggagaaattgtgtcaactgcaacccatctgcaaagca
aaggcgagaaatttgacagcctcgagacaaaagtgttcctggagggtaaacggtgcaaag
aagacattgatacttggctgagacaagacaataagtgctcgagcaagaagcgtaagagac
tttcgttataaacttcaaatttcttatgcttgaatctaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCACACTTACACAGCGATTAGG 667 609 24 Antisense
GAAATTGTGTCAACTGCAACCCATC 328 363 50 Antisense
GCAACCCATCTGCAAAGCAAAGGCG 84 321 65 Antisense
GAGAAATTTGACAGCCTCGAGACAA 414 393 89 Antisense
GCCTCGAGACAAAAGTGTTCCTGGA 355 283 102 Antisense
GTGTTCCTGGAGGGTAAACGGTGCA 644 483 116 Antisense
GAAGACATTGATACTTGGCTGAGAC 648 339 143 Antisense
GACAAGACAATAAGTGCTCGAGCAA 474 365 165 Antisense
GCAAGAAGCGTAAGAGACTTTCGTT 107 321 186 Antisense
GAGACTTTCGTTATAAACTTCAAAT 308 289 199 Antisense
CAAATTTCTTATGCTTGAATCTAAT 437 193 219 Antisense
Sequence Source Affymetrix Proprietary Database