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[175374_at]

Description AU116287_rc /REP_DB=TREMBL Accession /GB=AU116287 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk742h6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 50      6grp_total > 37      4grp_total > 21      6grp_highest_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 258
1 2 3 4 range
A 566.3
(2.8)
P 		522.6
(1)
P 		423
(-3)
P 		572.4
(3)
P 		149
B 522
(-0)
P 		497.9
(-0.6)
P 		393.6
(-3)
P 		651.1
(3)
P 		258
C 585.8
(1.9)
P 		426
(-3)
P 		473.7
(-1.5)
P 		622.9
(3)
P 		197
avr 558
(1.1) 		482.2
(-1.3) 		430.1
(-3) 		615.5
(3) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 557
1 2 3 4 5 6 range
A 861.5
(3)
P 		498.1
(-1.4)
P 		538.8
(-0.9)
P 		364.3
(-3)
P 		535.4
(-0.9)
P 		553
(-0.7)
P 		497
B 668
(3)
P 		487.9
(-0.4)
P 		556.6
(0.9)
P 		477.5
(-0.6)
P 		349.2
(-3)
P 		626
(2.2)
P 		319
C 537.5
(1.9)
P 		521.2
(1.5)
P 		472.6
(0.5)
P 		508.4
(1.2)
P 		304.6
(-3)
P 		592.6
(3)
P 		288
avr 689
(3) 		502.4
(-0.8) 		522.7
(-0.4) 		450.1
(-1.9) 		396.4
(-3) 		590.5
(1) 		293
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 206.2
(3)
P 		113.5
(-1.5)
P 		110.6
(-1.7)
P 		83.8
(-3)
P 		122
B 166.5
(3)
P 		123
(-0.5)
P 		91.2
(-3)
P 		138.8
(0.8)
P 		75
C 193.9
(3)
P 		122.5
(-1.8)
P 		165.1
(1.1)
P 		105
(-3)
P 		89
avr 188.9
(3) 		119.7
(-2.2) 		122.3
(-2) 		109.2
(-3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 158.8
(1.7)
P 		177.2
(3)
P 		117.3
(-1.2)
P 		92.4
(-3)
P 		161.6
(1.9)
P 		134.6
(-0)
P 		85
B 232.4
(2.9)
P 		162.4
(-1)
P 		135.2
(-2.5)
P 		126.5
(-3)
P 		141.9
(-2.1)
P 		233.4
(3)
P 		107
C 199.2
(3)
P 		159
(0.6)
P 		120.3
(-1.7)
P 		102.2
(-2.8)
P 		98.6
(-3)
P 		198.4
(3)
P 		101
avr 196.8
(3) 		166.2
(1) 		124.3
(-1.8) 		107
(-3) 		134
(-1.2) 		188.8
(2.5) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175374_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22429
Sequence Type Exemplar sequence
Representative Public ID AU116287 NCBI
Target Description AU116287_rc /REP_DB=TREMBL Accession /GB=AU116287 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk742h6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076152(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076152 NCBI Caenorhabditis elegans F40F4.7 (F40F4.7) mRNA, complete cds. 11/11 None
F40F4.7 ENSEMBL cdna:known chromosome:CEL140:X:3243905:3245969:-1 gene:F40F4.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3243950-3244227(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40F4.7
Entrez Gene 180614 Entrez gene
SwissProt Q20220 EMBL-EBI
WormBase CE28316 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250390_AT GCN5-related N-acetyltransferase (GNAT) family protein at
CANINE:1605781_AT similar to Mak3 homolog cfa
CANINE_2:CFAAFFX.16719.1.S1_S_AT similar to Mak3 homolog cfa
DROSOPHILA_2:1641017_AT separation anxiety dm
DROSGENOME1:147018_AT separation anxiety dm
CHICKEN:GGA.8828.1.S1_AT Mak3 homolog (S. cerevisiae) gga
CHICKEN:GGAAFFX.11409.1.S1_S_AT Mak3 homolog (S. cerevisiae) gga
CHICKEN:GGAAFFX.9403.1.S1_S_AT Mak3 homolog (S. cerevisiae) gga
HG-U133_PLUS_2:222393_S_AT Mak3 homolog (S. cerevisiae) hs
HG-U133B:222393_S_AT Mak3 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:217745_S_AT Mak3 homolog (S. cerevisiae) hs
HG-U133A:217745_S_AT Mak3 homolog (S. cerevisiae) hs
HG-U133A_2:217745_S_AT Mak3 homolog (S. cerevisiae) hs
HU35KSUBA:RC_AA406629_AT Mak3 homolog (S. cerevisiae) hs
HU35KSUBA:AA382450_AT Mak3 homolog (S. cerevisiae) hs
HU35KSUBC:RC_N20593_AT Mak3 homolog (S. cerevisiae) hs
U133_X3P:G13376734_3P_A_AT Mak3 homolog (S. cerevisiae) hs
U133_X3P:HS.288932.0.S1_3P_A_AT Mak3 homolog (S. cerevisiae) hs
HG-U95C:49027_AT Mak3 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:231199_AT Mak3 homolog (S. cerevisiae) hs
HG-U133B:231199_AT Mak3 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:244341_AT Mak3 homolog (S. cerevisiae) hs
HG-U133B:244341_AT Mak3 homolog (S. cerevisiae) hs
HG-U95C:55291_R_AT Mak3 homolog (S. cerevisiae) hs
HG-U95C:64641_AT Mak3 homolog (S. cerevisiae) hs
HG-U95D:77449_R_AT Mak3 homolog (S. cerevisiae) hs
HU35KSUBA:RC_AA214090_AT Mak3 homolog (S. cerevisiae) hs
HU35KSUBB:RC_T59257_AT Mak3 homolog (S. cerevisiae) hs
U133_X3P:HS.128705.0.A1_3P_AT Mak3 homolog (S. cerevisiae) hs
U133_X3P:HS.36269.0.A1_3P_AT Mak3 homolog (S. cerevisiae) hs
MG-U74BV2:112239_R_AT Mak3 homolog (S. cerevisiae) mm
MG-U74BV2:113079_AT Mak3 homolog (S. cerevisiae) mm
MG-U74BV2:108058_AT Mak3 homolog (S. cerevisiae) mm
MOE430B:1428409_AT Mak3 homolog (S. cerevisiae) mm
MOUSE430_2:1428409_AT Mak3 homolog (S. cerevisiae) mm
MOE430B:1428410_AT Mak3 homolog (S. cerevisiae) mm
MOUSE430_2:1428410_AT Mak3 homolog (S. cerevisiae) mm
MOE430B:1428970_AT Mak3 homolog (S. cerevisiae) mm
MOUSE430_2:1428970_AT Mak3 homolog (S. cerevisiae) mm
MG-U74CV2:168604_R_AT Mak3 homolog (S. cerevisiae) (Mak3), mRNA mm
MU19KSUBB:TC31692_AT Mak3 homolog (S. cerevisiae) (Mak3), mRNA mm
MU19KSUBB:TC34126_AT Mak3 homolog (S. cerevisiae) (Mak3), mRNA mm
MU19KSUBC:TC40423_AT Mak3 homolog (S. cerevisiae) (Mak3), mRNA mm
RAE230B:1397556_AT Mak3 homolog (S. cerevisiae) (predicted) rn
RAT230_2:1397556_AT Mak3 homolog (S. cerevisiae) (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8080 N-acetyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK84526 Hypothetical protein F40F4.7 [Caenorhabditis elegans] ref|NP_508553.1| F40F4.7 [Caenorhabditis elegans] 1.0E-127
blast T16306 hypothetical protein F40F4.7 - Caenorhabditis elegans 1.0E-127
blast CAE68395 Hypothetical protein CBG14164 [Caenorhabditis briggsae] 4.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR000182 EMBL-EBI GCN5-related N-acetyltransferase 6.4E-24
Sequence
Target Sequence 
>C. ELEGANS:175374_AT
tctgaactgtttcccttttcaaaattactttatttttatcatagcgactggtggcatcca
agcctggtctgcaagttggatctctagccattgacaattgccagcatggttgttttgtct
tctttcccatcttcaagcataaccgtgcctacccgtatgaaaaccatgtctgtttgagat
ttcccattttttctatgctttatttcatgtatcatcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGAACTGTTTCCCTTTTCAAAAT 60 607 14 Antisense
TAGCGACTGGTGGCATCCAAGCCTG 576 649 55 Antisense
AGCCTGGTCTGCAAGTTGGATCTCT 193 83 74 Antisense
GGATCTCTAGCCATTGACAATTGCC 32 513 91 Antisense
AGCATGGTTGTTTTGTCTTCTTTCC 640 77 116 Antisense
CTTCTTTCCCATCTTCAAGCATAAC 458 221 132 Antisense
ATCTTCAAGCATAACCGTGCCTACC 389 31 142 Antisense
CGTGCCTACCCGTATGAAAACCATG 626 243 157 Antisense
ACCATGTCTGTTTGAGATTTCCCAT 272 85 176 Antisense
TTCCCATTTTTTCTATGCTTTATTT 668 697 194 Antisense
ATGCTTTATTTCATGTATCATCATT 479 43 208 Antisense
Sequence Source Affymetrix Proprietary Database