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[175371_at]

Description AV183832_rc /REP_DB=TREMBL Accession /GB=AV183832 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk656g2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 60      6grp_total > 28      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 312
1 2 3 4 range
A 452.7
(2.5)
P 		212.3
(-3)
P 		214.9
(-2.9)
P 		475.8
(3)
P 		264
B 404.3
(1.1)
P 		200.9
(-3)
P 		227.7
(-2.5)
P 		499
(3)
P 		298
C 339.3
(-0.1)
P 		190.9
(-3)
P 		226.4
(-2.3)
P 		502.9
(3)
P 		312
avr 398.8
(1.1) 		201.4
(-3) 		223
(-2.6) 		492.6
(3) 		291

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 510
1 2 3 4 5 6 range
A 516.2
(3)
P 		427.1
(1.5)
P 		160.1
(-3)
P 		236.8
(-1.7)
P 		417.1
(1.3)
P 		403.5
(1.1)
P 		356
B 580.4
(3)
P 		413.5
(0.7)
P 		148.7
(-3)
P 		312
(-0.7)
P 		288
(-1.1)
P 		297
(-0.9)
P 		432
C 658.2
(3)
P 		281
(-2.6)
P 		290
(-2.5)
P 		254.5
(-3)
P 		353.1
(-1.5)
P 		274.7
(-2.7)
P 		404
avr 584.9
(3) 		373.9
(-0.3) 		199.6
(-3) 		267.8
(-1.9) 		352.7
(-0.6) 		325.1
(-1) 		385
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 164.8
(3)
P 		46.1
(-3)
P 		56.2
(-2.5)
P 		69.7
(-1.8)
P 		119
B 128.9
(3)
P 		49.6
(-3)
P 		52.8
(-2.8)
P 		106.3
(1.3)
P 		79
C 112.3
(3)
P 		54.9
(-3)
P 		78.9
(-0.5)
P 		84.8
(0.1)
P 		57
avr 135.3
(3) 		50.2
(-3) 		62.6
(-2.1) 		86.9
(-0.4) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 95.2
(0.1)
P 		151.9
(3)
P 		34.9
(-3)
P 		60.1
(-1.7)
P 		125.9
(1.7)
P 		98.2
(0.2)
P 		117
B 202
(3)
P 		137.6
(0.7)
P 		36.1
(-3)
P 		82.6
(-1.3)
P 		117
(-0.1)
P 		110.7
(-0.3)
P 		166
C 244
(3)
P 		85.8
(-1.9)
P 		73.8
(-2.3)
P 		51.2
(-3)
P 		114.2
(-1)
P 		92
(-1.7)
P 		193
avr 180.4
(3) 		125.1
(0.5) 		48.3
(-3) 		64.6
(-2.3) 		119
(0.2) 		100.3
(-0.6) 		132
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175371_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22108
Sequence Type Exemplar sequence
Representative Public ID AV183832 NCBI
Target Description AV183832_rc /REP_DB=TREMBL Accession /GB=AV183832 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk656g2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029661(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029661 NCBI Caenorhabditis elegans R04E5.8a (R04E5.8) mRNA, complete cds. 11/11 None
R04E5.8a ENSEMBL cdna:known chromosome:CEL140:X:8801561:8806048:-1 gene:R04E5.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181127 2 1 NM_001029661 175371_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8801571-8801901(-) 100.0 100.0
Public Domain and Genome References
Ensembl R04E5.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG00010 Hypothetical protein R04E5.8a [Caenorhabditis elegans] ref|NP_001024832.1| R04E5.8a [Caenorhabditis elegans] 0.0
blast AAP31431 Hypothetical protein R04E5.8b [Caenorhabditis elegans] ref|NP_001024833.1| R04E5.8b [Caenorhabditis elegans] 1.0E-32
Sequence
Target Sequence 
>C. ELEGANS:175371_AT
gtgtctccaattttttttgcttcaaattctctctagtttttttgctactgctacttctcc
attccccaattcccaaagtctcatcttaacccatttctccgtttttttcctccttttttc
tcggtaatttagttttcccatcaattctatacattttgtcatccttttgaattcccgaat
tcccagttgaatcagtcccgaagaacctcttcaagtcatttttttattttgcttcgcgaa
tcgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTCTCCAATTTTTTTTGCTTCAA 248 487 50 Antisense
TTTGCTTCAAATTCTCTCTAGTTTT 320 669 65 Antisense
AGTTTTTTTGCTACTGCTACTTCTC 383 63 84 Antisense
AAAGTCTCATCTTAACCCATTTCTC 168 123 124 Antisense
TCTCGGTAATTTAGTTTTCCCATCA 573 609 168 Antisense
GTTTTCCCATCAATTCTATACATTT 184 449 181 Antisense
TTTTGTCATCCTTTTGAATTCCCGA 499 677 203 Antisense
GAATTCCCGAATTCCCAGTTGAATC 3 325 218 Antisense
TTGAATCAGTCCCGAAGAACCTCTT 248 705 236 Antisense
GAAGAACCTCTTCAAGTCATTTTTT 9 339 249 Antisense
TTTTTATTTTGCTTCGCGAATCGCG 314 673 270 Antisense
Sequence Source Affymetrix Proprietary Database