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[175370_at]

Description AV182029_rc /REP_DB=TREMBL Accession /GB=AV182029 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk631b5 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 42      4grp_highest_8_8 > 12      4grp_high_8_8 > 30      6grp_total > 20      4grp_total > 33      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 239
1 2 3 4 range
A 187
(-3)
P 		287.5
(-0.2)
P 		401.4
(3)
P 		364.2
(2)
P 		214
B 209.7
(-3)
P 		373.9
(3)
P 		373.2
(3)
P 		323.6
(1.2)
P 		164
C 179.3
(-3)
P 		376.4
(2)
P 		293.8
(-0.1)
P 		417.9
(3)
P 		239
avr 192
(-3) 		345.9
(2.2) 		356.1
(2.6) 		368.6
(3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 202.1
(0.1)
P 		315
(3)
P 		300.9
(2.6)
P 		272.2
(1.9)
P 		267.7
(1.8)
P 		81.9
(-3)
A 		233
B 255.1
(0.2)
P 		321.2
(2.1)
P 		352.5
(3)
P 		320.6
(2.1)
P 		260
(0.4)
P 		142.9
(-3)
P 		210
C 179.7
(-1.9)
P 		328
(3)
P 		320.5
(2.7)
P 		284.7
(1.6)
P 		283.4
(1.5)
P 		148.2
(-3)
P 		180
avr 212.3
(-0.4) 		321.4
(2.9) 		324.6
(3) 		292.5
(2) 		270.4
(1.4) 		124.3
(-3) 		200
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 68.1
(-1.3)
P 		62.4
(-1.9)
P 		104.9
(3)
P 		53.3
(-3)
P 		52
B 66.9
(-3)
P 		92.3
(3)
P 		86.5
(1.6)
P 		69
(-2.5)
P 		25
C 59.4
(-3)
P 		108.2
(3)
P 		102.4
(2.3)
P 		70.5
(-1.6)
P 		49
avr 64.8
(-2.9) 		87.6
(1.2) 		97.9
(3) 		64.3
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 37.3
(-1.9)
P 		112
(3)
P 		65.5
(-0)
P 		69
(0.2)
P 		80.8
(1)
P 		19.9
(-3)
A 		92
B 88.8
(1)
P 		106.9
(3)
P 		85.6
(0.6)
P 		84.9
(0.5)
P 		105.6
(2.9)
P 		53.3
(-3)
P 		54
C 66.6
(-1)
P 		100.1
(3)
P 		81.6
(0.8)
P 		57.3
(-2.1)
P 		91.7
(2)
P 		49.6
(-3)
P 		51
avr 64.2
(-0.9) 		106.3
(3) 		77.6
(0.4) 		70.4
(-0.3) 		92.7
(1.8) 		40.9
(-3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175370_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20677
Sequence Type Exemplar sequence
Representative Public ID AV182029 NCBI
Target Description AV182029_rc /REP_DB=TREMBL Accession /GB=AV182029 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk631b5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K10G6.1 ENSEMBL cdna:known chromosome:CEL140:II:3982567:3986958:1 gene:K10G6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3986591-3986947(+) 89.33 100.0
Public Domain and Genome References
Ensembl K10G6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494704 abnormal cell LINeage family member (lin-31) [Caenorhabditis elegans] gb|AAB66096.1| Abnormal cell lineage protein 31 [Caenorhabditis elegans] sp|P34683|LIN31_CAEEL Abnormal cell lineage protein 31 (Protein lin-31) gb|AAA28104.1| lin-31 protein 8.0E-82
blast CAE71507 Hypothetical protein CBG18439 [Caenorhabditis briggsae] 9.0E-67
blast CAD31848 FoxB2 protein [Xenopus laevis] 2.0E-45
Protein Domains
Database ID Description E-Value
scop a.4.5.Forkhead DNA-binding domain All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Forkhead DNA-binding domain 9.0005400363583E-42
Pfam IPR001766 EMBL-EBI Fork head transcription factor 3.2E-69
Sequence
Target Sequence 
>C. ELEGANS:175370_AT
gtgcaaatgcgctctgttaaccaactaaccgactaacccaacctagcagccgacatttca
cggggcaaaacctgtaaactgtcggctgctaagcggaggacctactaacaactgatatta
tcaatgataacattccacacatcccagctcccaatatttccatcggtgttaacttttttc
agattttttctgaagcttaaacttcagaatgtcaattctgttctaaacctagtccctata
catttgaaattattgattttctagatttttcttcttgtgataagtacttcttgtactctg
ttccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCAAATGCGCTCTGTTAACCAAC 152 481 24 Antisense
GACATTTCACGGGGCAAAACCTGTA 140 323 75 Antisense
AAAACCTGTAAACTGTCGGCTGCTA 701 129 90 Antisense
GTCGGCTGCTAAGCGGAGGACCTAC 193 473 104 Antisense
GCGGAGGACCTACTAACAACTGATA 256 293 116 Antisense
AATGATAACATTCCACACATCCCAG 230 165 146 Antisense
GCTCCCAATATTTCCATCGGTGTTA 636 297 170 Antisense
TTCCATCGGTGTTAACTTTTTTCAG 363 701 181 Antisense
ATTCTGTTCTAAACCTAGTCCCTAT 685 3 238 Antisense
GATTTTCTAGATTTTTCTTCTTGTG 453 429 278 Antisense
TAAGTACTTCTTGTACTCTGTTCCC 14 637 304 Antisense
Sequence Source Affymetrix Proprietary Database