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[175369_at]

Description AU113581_rc /REP_DB=TREMBL Accession /GB=AU113581 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk709c8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 98      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 97      6grp_total > 96      4grp_total > 22      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 953
1 2 3 4 range
A 1001.1
(3)
P 		431.3
(-3)
P 		508.3
(-2.2)
P 		735.9
(0.2)
P 		570
B 786.7
(-0.2)
P 		481.4
(-2.1)
P 		340.9
(-3)
P 		1293.5
(3)
P 		953
C 1064
(3)
P 		465.3
(-3)
P 		463.2
(-3)
P 		988.7
(2.2)
P 		601
avr 950.6
(2.4) 		459.3
(-2.8) 		437.5
(-3) 		1006
(3) 		569

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 853
1 2 3 4 5 6 range
A 618.4
(-3)
P 		701.9
(-2.2)
P 		1216.8
(2.5)
P 		729.6
(-2)
P 		1266.2
(3)
P 		1046.1
(1)
P 		648
B 957.8
(-0.5)
P 		676.5
(-3)
P 		1362.6
(3)
P 		1092.9
(0.6)
P 		1157.3
(1.2)
P 		1245.5
(2)
P 		686
C 776.5
(-2.4)
P 		794.6
(-2.2)
P 		696.3
(-3)
P 		990.6
(-0.7)
P 		1178.7
(0.7)
P 		1471.2
(3)
P 		775
avr 784.2
(-2.3) 		724.3
(-3) 		1091.9
(1.2) 		937.7
(-0.6) 		1200.7
(2.4) 		1254.3
(3) 		530
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 286
1 2 3 4 range
A 364.5
(3)
P 		93.6
(-3)
P 		132.9
(-2.1)
P 		107.7
(-2.7)
P 		271
B 250.9
(2.2)
P 		118.9
(-1.8)
P 		79
(-3)
P 		275.6
(3)
P 		197
C 352.2
(3)
P 		133.8
(-3)
P 		161.4
(-2.2)
P 		166.7
(-2.1)
P 		218
avr 322.5
(3) 		115.4
(-3) 		124.4
(-2.7) 		183.3
(-1) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 379
1 2 3 4 5 6 range
A 114
(-3)
P 		249.6
(0)
P 		265
(0.4)
P 		185
(-1.4)
P 		382.1
(3)
P 		254.7
(0.1)
P 		268
B 333.3
(-0.4)
P 		225.2
(-3)
P 		330.9
(-0.4)
P 		289.5
(-1.4)
P 		470.2
(3)
P 		464.4
(2.9)
P 		245
C 287.8
(-0.9)
P 		242.5
(-1.8)
P 		177.2
(-3)
P 		199.2
(-2.6)
P 		381.4
(0.9)
P 		492.5
(3)
P 		315
avr 245
(-2.3) 		239.1
(-2.5) 		257.7
(-1.9) 		224.6
(-3) 		411.2
(3) 		403.9
(2.8) 		187
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175369_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21712
Sequence Type Exemplar sequence
Representative Public ID AU113581 NCBI
Target Description AU113581_rc /REP_DB=TREMBL Accession /GB=AU113581 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk709c8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072662(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072662 NCBI Caenorhabditis elegans Y97E10AR.6 (Y97E10AR.6) mRNA, complete cds. 11/11 A 
Y97E10AR.6 ENSEMBL cdna:known chromosome:CEL140:V:8014994:8016773:-1 gene:Y97E10AR.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015074 4/11 Cross Hyb Matching Probes None
GENEFINDER00000015075 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8015054-8015458(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y97E10AR.6
Entrez Gene 179179 Entrez gene
SwissProt Q965R9 EMBL-EBI
WormBase CE27417 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85515 Hypothetical protein Y97E10AR.6 [Caenorhabditis elegans] ref|NP_505063.1| Y97E10AR.6 [Caenorhabditis elegans] 1.0E-172
blast CAE66159 Hypothetical protein CBG11393 [Caenorhabditis briggsae] 1.0E-126
blast NP_001012860 BSD domain containing 1 [Gallus gallus] emb|CAG32437.1| hypothetical protein [Gallus gallus] 5.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR005607 EMBL-EBI BSD 3.8E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505063.1 1 17-39
Y97E10AR.6 1 17-39
Sequence
Target Sequence 
>C. ELEGANS:175369_AT
gaggaaattccatcaaatgacgaagatgacgaaaagggaccattgacacctcgacctgaa
agcgaaaagaaagaagaaggatgggttaactgggatgaataattcaaatgctcttttttc
actaaattcacttctttttcgatattctacatgttcctgtcaataattccactgtcactc
ctatctctttaaagcttctagaatcaaatggctagcatcattccccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGAAATTCCATCAAATGACGAAG 185 405 27 Antisense
GATGACGAAAAGGGACCATTGACAC 490 403 51 Antisense
CATTGACACCTCGACCTGAAAGCGA 378 215 67 Antisense
GAAGGATGGGTTAACTGGGATGAAT 535 331 102 Antisense
TCTTTTTTCACTAAATTCACTTCTT 431 615 138 Antisense
AAATTCACTTCTTTTTCGATATTCT 695 115 150 Antisense
ATATTCTACATGTTCCTGTCAATAA 468 19 168 Antisense
CTGTCAATAATTCCACTGTCACTCC 501 239 183 Antisense
GTCACTCCTATCTCTTTAAAGCTTC 293 465 200 Antisense
CTCCTATCTCTTTAAAGCTTCTAGA 558 235 204 Antisense
ATCAAATGGCTAGCATCATTCCCCC 600 25 229 Antisense
Sequence Source Affymetrix Proprietary Database