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[175366_at]

Description AV199751_rc /REP_DB=TREMBL Accession /GB=AV199751 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk551b7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 23      4grp_high_8_8 > 25      6grp_highest_nonorm > 90      6grp_total > 12      4grp_total > 38      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 312
1 2 3 4 range
A 344.2
(3)
P 		212
(-0.3)
P 		106.1
(-3)
P 		189.1
(-0.9)
P 		238
B 337.9
(3)
P 		218.5
(0)
P 		95.5
(-3)
A 		196.7
(-0.5)
P 		242
C 407.8
(3)
P 		207.6
(-2.5)
P 		187.5
(-3)
P 		205.7
(-2.5)
P 		220
avr 363.3
(3) 		212.7
(-0.9) 		129.7
(-3) 		197.2
(-1.3) 		234

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 224
(1.6)
P 		273.2
(3)
P 		125.1
(-1.3)
P 		179.4
(0.3)
P 		117.1
(-1.6)
P 		67.8
(-3)
P 		205
B 170.3
(-0)
P 		245.1
(3)
P 		131.1
(-1.6)
P 		185
(0.6)
P 		133.7
(-1.5)
P 		95.9
(-3)
P 		149
C 183
(0.8)
P 		254.6
(3)
P 		244.7
(2.7)
P 		203.1
(1.4)
P 		146
(-0.4)
P 		63.6
(-3)
P 		191
avr 192.4
(0.8) 		257.6
(3) 		167
(0) 		189.2
(0.7) 		132.3
(-1.1) 		75.8
(-3) 		182
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 125.3
(3)
P 		46
(-1.9)
P 		27.7
(-3)
P 		27.7
(-3)
P 		98
B 107.8
(3)
P 		54
(-0.8)
P 		22.1
(-3)
A 		41.9
(-1.6)
P 		86
C 135
(3)
P 		59.7
(-1.5)
P 		65.4
(-1.2)
P 		34.7
(-3)
P 		100
avr 122.7
(3) 		53.2
(-1.7) 		38.4
(-2.8) 		34.8
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 41.3
(-1.2)
P 		97.1
(3)
P 		27.2
(-2.2)
P 		45.5
(-0.8)
P 		35.3
(-1.6)
P 		16.5
(-3)
P 		81
B 59.3
(0.3)
P 		81.6
(3)
P 		31.8
(-3)
P 		49
(-0.9)
P 		54.3
(-0.3)
P 		35.7
(-2.5)
P 		50
C 67.8
(1.9)
P 		77.7
(3)
P 		62.3
(1.4)
P 		40.8
(-0.9)
P 		47.3
(-0.2)
P 		21.3
(-3)
P 		56
avr 56.1
(0.1) 		85.5
(3) 		40.4
(-1.4) 		45.1
(-1) 		45.6
(-0.9) 		24.5
(-3) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175366_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22288
Sequence Type Exemplar sequence
Representative Public ID AV199751 NCBI
Target Description AV199751_rc /REP_DB=TREMBL Accession /GB=AV199751 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk551b7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV199751
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV199751 AV199751_rc /REP_DB=TREMBL Accession /GB=AV199751 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk551b7 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15778639-15778919(-) 87.86 100.0
Sequence
Target Sequence 
>C. ELEGANS:175366_AT
cgaggcgcaacaaaggtgccatcgtcatgaggagacgccgtgacgaagaagacgcatcta
ttggacctaggacatggacttgattccttaccattcaagagtgagataaagataaccaca
acaataggccggcccggagcaccccgccaacattgtaacgaaaggatgaggaggaattac
ttttaattttttttaatttttaattaatttttttcttccttctcaatttttttggtagtc
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGGCGCAACAAAGGTGCCATCGT 479 249 13 Antisense
GGTGCCATCGTCATGAGGAGACGCC 5 501 27 Antisense
TCATGAGGAGACGCCGTGACGAAGA 447 617 37 Antisense
AGAAGACGCATCTATTGGACCTAGG 277 75 59 Antisense
TGGACCTAGGACATGGACTTGATTC 26 549 74 Antisense
ACATGGACTTGATTCCTTACCATTC 21 107 84 Antisense
GATTCCTTACCATTCAAGAGTGAGA 447 431 94 Antisense
GATAACCACAACAATAGGCCGGCCC 471 423 123 Antisense
ACAACAATAGGCCGGCCCGGAGCAC 200 113 130 Antisense
CACCCCGCCAACATTGTAACGAAAG 432 199 152 Antisense
TCCTTCTCAATTTTTTTGGTAGTCA 587 591 229 Antisense
Sequence Source Affymetrix Proprietary Database