[Home] | [Total List]

[175364_at]

Description AV185348_rc /REP_DB=TREMBL Accession /GB=AV185348 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk677a2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 63      4grp_high_8_8 > 27      6grp_highest_nonorm > 77      6grp_total > 38      4grp_total > 29      6grp_highest_sub > Cu      6grp_cgc > 07      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 920
1 2 3 4 range
A 1992.8
(-0.2)
P 		2394.7
(3)
P 		1630.5
(-3)
P 		2289
(2.2)
P 		764
B 2001.9
(3)
P 		1771.6
(0.4)
P 		1474.3
(-3)
P 		1698.6
(-0.4)
P 		528
C 1962.2
(3)
P 		1655.1
(-1.2)
P 		1527.5
(-3)
P 		1737.8
(-0.1)
P 		435
avr 1985.6
(3) 		1940.5
(2.4) 		1544.1
(-3) 		1908.5
(2) 		442

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1456
1 2 3 4 5 6 range
A 2367.3
(3)
P 		1255.7
(-1.6)
P 		1152.3
(-2)
P 		911
(-3)
P 		1557.1
(-0.3)
P 		1753.2
(0.5)
P 		1456
B 1988.3
(3)
P 		1290
(-1.2)
P 		1020.4
(-2.9)
P 		1442.1
(-0.3)
P 		998.6
(-3)
P 		1884.5
(2.4)
P 		990
C 1430.7
(3)
P 		1311.6
(1.5)
P 		1274.9
(1.1)
P 		942.3
(-3)
P 		1208.2
(0.3)
P 		1318.9
(1.6)
P 		488
avr 1928.8
(3) 		1285.8
(-1.6) 		1149.2
(-2.6) 		1098.5
(-3) 		1254.6
(-1.9) 		1652.2
(1) 		830
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 433
1 2 3 4 range
A 725.6
(3)
P 		519.8
(-0.2)
P 		426.2
(-1.6)
P 		335.1
(-3)
P 		391
B 638.4
(3)
P 		437.5
(-1.1)
P 		341.6
(-3)
P 		362
(-2.6)
P 		297
C 649.5
(3)
P 		475.9
(0.1)
P 		532.4
(1)
P 		293
(-3)
P 		357
avr 671.2
(3) 		477.7
(-0.4) 		433.4
(-1.2) 		330
(-3) 		341

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 513
1 2 3 4 5 6 range
A 436.4
(2.2)
P 		446.6
(2.4)
P 		250.9
(-2.5)
P 		231
(-3)
P 		469.9
(3)
P 		426.9
(1.9)
P 		239
B 691.8
(2.9)
P 		429.4
(-0.6)
P 		247.8
(-3)
P 		382
(-1.2)
P 		405.7
(-0.9)
P 		702.7
(3)
P 		455
C 530.3
(3)
P 		400.2
(0.7)
P 		324.5
(-0.6)
P 		189.5
(-3)
P 		391
(0.5)
P 		441.5
(1.4)
P 		341
avr 552.8
(3) 		425.4
(0.3) 		274.4
(-2.9) 		267.5
(-3) 		422.2
(0.3) 		523.7
(2.4) 		285
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175364_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22293
Sequence Type Exemplar sequence
Representative Public ID AV185348 NCBI
Target Description AV185348_rc /REP_DB=TREMBL Accession /GB=AV185348 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk677a2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078310(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078310 NCBI Caenorhabditis elegans AMP-Activated Kinase family member (aak-2) (aak-2) mRNA, complete cds. 11/11 None
T01C8.1a.2 ENSEMBL cdna:known chromosome:CEL140:X:16795998:16803270:1 gene:T01C8.1 11/11 None
T01C8.1a.1 ENSEMBL cdna:known chromosome:CEL140:X:16796000:16803270:1 gene:T01C8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181727 3 1 NM_078310 175364_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16802855-16803224(+) 100.0 100.0
Public Domain and Genome References
Ensembl T01C8.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAR06928 AMP-activated protein kinase alpha subunit 1 [Caenorhabditis elegans] gb|AAM69095.1| Amp-activated kinase protein 2, isoform a [Caenorhabditis elegans] ref|NP_510711.2| AMP-Activated Kinase family member (aak-2) [Caenorhabditis elegans] 0.0
blast AAM69096 Amp-activated kinase protein 2, isoform b [Caenorhabditis elegans] ref|NP_510710.2| AMP-Activated Kinase family member (aak-2) [Caenorhabditis elegans] 0.0
blast AAP13770 Amp-activated kinase protein 2, isoform c [Caenorhabditis elegans] ref|NP_001024868.1| AMP-Activated Kinase family member (aak-2) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 3.0E-75
hanks 2.2.7 CaMK Group; CaMK II KIN1/SNF1/Nim1; AKIN10 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 7.4E-99
Sequence
Target Sequence 
>C. ELEGANS:175364_AT
attggttcactttgttgcagcttacagtatctttgtattttttttcttgactctgtttgg
ttttgcccctccccccttcacctccgtaaatgccacgtattttaattgatgctattctag
tgccgctttcattttcagccaattttgacaagtaaccatacaaataattatttaaagtta
tgacttgacttgtcaccccctttgtttctgtgaatagattttccttcagcgagtgattgt
ttctgttttttatatgtttctcttcagtagtttttttttctgtcttttaaactccccttc
tcctacttctttgtgtctattgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGGTTCACTTTGTTGCAGCTTAC 702 3 24 Antisense
TTCTTGACTCTGTTTGGTTTTGCCC 379 689 67 Antisense
TTCACCTCCGTAAATGCCACGTATT 207 687 100 Antisense
AATTGATGCTATTCTAGTGCCGCTT 443 179 127 Antisense
TTCTAGTGCCGCTTTCATTTTCAGC 511 683 138 Antisense
AGTTATGACTTGACTTGTCACCCCC 682 63 199 Antisense
TCACCCCCTTTGTTTCTGTGAATAG 189 625 216 Antisense
AATAGATTTTCCTTCAGCGAGTGAT 612 171 236 Antisense
GCGAGTGATTGTTTCTGTTTTTTAT 177 291 252 Antisense
ATATGTTTCTCTTCAGTAGTTTTTT 72 21 275 Antisense
TCTCCTACTTCTTTGTGTCTATTGT 194 611 322 Antisense
Sequence Source Affymetrix Proprietary Database