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[175363_at]

Description AU114833_rc /REP_DB=TREMBL Accession /GB=AU114833 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk728h5 : 3prime end, single read.
Cluster 6grp_total > 12      4grp_total > 51      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 83.7
(-0.3)
P 		183.4
(3)
P 		74.6
(-0.6)
P 		3.8
(-3)
A 		180
B 79.6
(-0)
P 		156.5
(3)
P 		139.5
(2.3)
P 		2.7
(-3)
A 		154
C 81.1
(-0.4)
P 		165.4
(2.4)
P 		184.1
(3)
P 		1.9
(-3)
A 		182
avr 81.5
(-0.1) 		168.4
(3) 		132.7
(1.7) 		2.8
(-3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 71
(3)
P 		63.1
(0.3)
P 		62.8
(0.2)
P 		66.6
(1.5)
A 		69.1
(2.3)
A 		53.6
(-3)
A 		17
B 81.4
(1.4)
P 		94
(3)
P 		62.1
(-1.1)
A 		61.1
(-1.3)
P 		56.1
(-1.9)
M 		47.6
(-3)
A 		46
C 97.2
(0.5)
P 		144.5
(3)
P 		84.3
(-0.2)
A 		87.4
(-0)
A 		53.5
(-1.8)
A 		31.8
(-3)
A 		113
avr 83.2
(1.2) 		100.5
(3) 		69.7
(-0.3) 		71.7
(-0.1) 		59.6
(-1.4) 		44.3
(-3) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 30.5
(1.6)
P 		39.8
(3)
P 		19.5
(-0.1)
P 		0.6
(-3)
A 		39
B 25.4
(0.9)
P 		38.7
(3)
P 		32.3
(2)
P 		0.6
(-3)
A 		38
C 26.9
(-0.5)
P 		47.6
(1.4)
P 		64.2
(3)
P 		0.3
(-3)
A 		64
avr 27.6
(0.9) 		42
(3) 		38.7
(2.5) 		0.5
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 13.1
(-2.9)
P 		22.4
(3)
P 		13.7
(-2.6)
P 		16.9
(-0.5)
A 		20.9
(2)
A 		13
(-3)
A 		9
B 28.3
(1.9)
P 		31.3
(3)
P 		15.1
(-3)
A 		16.2
(-2.6)
P 		22.8
(-0.1)
M 		17.7
(-2)
A 		16
C 36
(1.5)
P 		44.1
(3)
P 		21.5
(-1)
A 		17.6
(-1.7)
A 		17.3
(-1.8)
A 		10.6
(-3)
A 		34
avr 25.8
(0.8) 		32.6
(3) 		16.8
(-2) 		16.9
(-2) 		20.3
(-0.9) 		13.8
(-3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175363_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20345
Sequence Type Exemplar sequence
Representative Public ID AU114833 NCBI
Target Description AU114833_rc /REP_DB=TREMBL Accession /GB=AU114833 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk728h5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059661(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059661 NCBI Caenorhabditis elegans F13G3.3 (F13G3.3) mRNA, complete cds. 11/11 A 
SNAP00000006937 ENSEMBL cdna:SNAP chromosome:CEL140:I:7305076:7307237:-1 11/11 None
GENEFINDER00000006952 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7305076:7308093:-1 11/11 None
F13G3.3 ENSEMBL cdna:known chromosome:CEL140:I:7305066:7308108:-1 gene:F13G3.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7305046-7305418(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13G3.3
Entrez Gene 172475 Entrez gene
SwissProt Q19417 EMBL-EBI
WormBase CE27124 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95788 Hypothetical protein F13G3.3 [Caenorhabditis elegans] ref|NP_492062.1| F13G3.3 [Caenorhabditis elegans] sp|Q19417|YSNK_CAEEL Hypothetical protein F13G3.3 in chromosome I 0.0
blast CAE74214 Hypothetical protein CBG21896 [Caenorhabditis briggsae] 0.0
blast T20852 hypothetical protein F13G3.3 - Caenorhabditis elegans 0.0
blast CAA95788 Hypothetical protein F13G3.3 [Caenorhabditis elegans] ref|NP_492062.1| F13G3.3 [Caenorhabditis elegans] sp|Q19417|YSNK_CAEEL Hypothetical protein F13G3.3 in chromosome I 1.0E-158
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 2.6E-63
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 9.6E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492062.1 1 5-27
F13G3.3 1 5-27
GENEFINDER00000006952 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:175363_AT
gaatgagctggaagtcatcagtcagacgacatctacgtaatcttcctatcaacatgacat
actcaaaattaatcagtgattgttataaacaatcatattatgctttccactctgcaaatg
aaaatcacgggatgttgtgtccgggtccagaaagatgcgatatttcaaaccacaagacac
gttgttggattagtgttggagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGAGCTGGAAGTCATCAGTCAG 595 331 43 Antisense
GTCATCAGTCAGACGACATCTACGT 50 467 56 Antisense
GACATCTACGTAATCTTCCTATCAA 47 371 70 Antisense
ATCTTCCTATCAACATGACATACTC 366 31 82 Antisense
AATCATATTATGCTTTCCACTCTGC 321 171 133 Antisense
TTATGCTTTCCACTCTGCAAATGAA 558 679 140 Antisense
AATCACGGGATGTTGTGTCCGGGTC 20 171 165 Antisense
GTTGTGTCCGGGTCCAGAAAGATGC 370 435 176 Antisense
ATGCGATATTTCAAACCACAAGACA 697 41 197 Antisense
AAACCACAAGACACGTTGTTGGATT 400 125 209 Antisense
ACGTTGTTGGATTAGTGTTGGAGAA 143 93 221 Antisense
Sequence Source Affymetrix Proprietary Database