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[175362_at]

Description AV180138_rc /REP_DB=TREMBL Accession /GB=AV180138 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk603b8 : 3prime end, single read.
Cluster 6grp_total > 89      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 29.5
(3)
A 		2.7
(-3)
A 		7
(-2)
A 		22.6
(1.5)
A 		27
B 8.3
(-3)
A 		21.8
(3)
A 		8.5
(-2.9)
A 		14.8
(-0.1)
A 		14
C 41.8
(0.6)
A 		23
(-1.8)
A 		14.2
(-3)
A 		60
(3)
A 		46
avr 26.5
(1.4) 		15.8
(-1.4) 		9.9
(-3) 		32.5
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 42.3
(0.6)
A 		22.4
(-1.3)
A 		3.9
(-3)
A 		5.2
(-2.9)
A 		68.1
(3)
A 		45.6
(0.9)
A 		64
B 7
(-2.8)
A 		46.7
(-0.5)
A 		3.4
(-3)
A 		9.5
(-2.6)
A 		44.2
(-0.7)
A 		107.6
(3)
P 		104
C 11.8
(-2.6)
A 		21.2
(-1.9)
A 		15.7
(-2.3)
A 		5.9
(-3)
A 		52.4
(0.3)
A 		90.2
(3)
A 		84
avr 20.4
(-1.9) 		30.1
(-1.1) 		7.7
(-2.9) 		6.9
(-3) 		54.9
(0.9) 		81.1
(3) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 10.7
(3)
A 		0.6
(-3)
A 		1.8
(-2.3)
A 		3.3
(-1.4)
A 		10
B 2.6
(-1.9)
A 		5.4
(3)
A 		2
(-3)
A 		3.1
(-1.1)
A 		3
C 13.8
(3)
A 		6.6
(-1.9)
A 		5
(-3)
A 		10.1
(0.5)
A 		9
avr 9
(3) 		4.2
(-1.7) 		2.9
(-3) 		5.5
(-0.4) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 7.8
(-0.9)
A 		8
(-0.8)
A 		0.9
(-3)
A 		1.3
(-2.9)
A 		20.6
(3)
A 		11.1
(0.1)
A 		20
B 2.4
(-2.8)
A 		15.5
(-0.8)
A 		0.8
(-3)
A 		2.5
(-2.7)
A 		18
(-0.4)
A 		40.1
(3)
P 		39
C 4.4
(-2.3)
A 		6.5
(-1.9)
A 		4
(-2.4)
A 		1.2
(-3)
A 		16.9
(0.2)
A 		30.2
(3)
A 		29
avr 4.9
(-2.2) 		10
(-1) 		1.9
(-3) 		1.7
(-3) 		18.5
(1) 		27.1
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175362_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20816
Sequence Type Exemplar sequence
Representative Public ID AV180138 NCBI
Target Description AV180138_rc /REP_DB=TREMBL Accession /GB=AV180138 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk603b8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZK177.1 ENSEMBL cdna:known chromosome:CEL140:II:5526084:5529544:1 gene:ZK177.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5529253-5529532(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK177.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG00044 Hypothetical protein ZK177.1 [Caenorhabditis elegans] ref|NP_495060.1| ZK177.1 [Caenorhabditis elegans] sp|Q09370|YS41_CAEEL Hypothetical protein ZK177.1 in chromosome II 0.0
Sequence
Target Sequence 
>C. ELEGANS:175362_AT
atccagtatttatattctccacctctcatttcttctcaaatcagaagaagcaatgctcct
tctcataaattattacctagtttgaaattacaatagctttagtacgagtcccccagcctt
ccactctttcggtttatttgcaattcgcaaattaattcaaaaaattcaaatcttttgagc
tactagaatgtttccctatattttttattttctttaaatctgtattttaaacaaccctaa
tca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCAGTATTTATATTCTCCACCTC 547 37 17 Antisense
ACCTCTCATTTCTTCTCAAATCAGA 674 87 37 Antisense
AGAAGAAGCAATGCTCCTTCTCATA 676 73 59 Antisense
AGCAATGCTCCTTCTCATAAATTAT 400 75 65 Antisense
GCTCCTTCTCATAAATTATTACCTA 459 297 71 Antisense
TACAATAGCTTTAGTACGAGTCCCC 108 643 105 Antisense
TTGCAATTCGCAAATTAATTCAAAA 82 705 154 Antisense
AAATTCAAATCTTTTGAGCTACTAG 445 115 178 Antisense
GAGCTACTAGAATGTTTCCCTATAT 247 371 193 Antisense
TAGAATGTTTCCCTATATTTTTTAT 604 651 200 Antisense
TCTGTATTTTAAACAACCCTAATCA 493 607 235 Antisense
Sequence Source Affymetrix Proprietary Database