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[175361_at]

Description AU116571_rc /REP_DB=TREMBL Accession /GB=AU116571 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk746c2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 86      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 83      6grp_total > 67      4grp_total > 23      6grp_highest_sub > In      6grp_cgc > 47      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 461.9
(3)
P 		372.4
(0.2)
P 		271.4
(-3)
P 		413.7
(1.5)
P 		191
B 380.5
(3)
P 		312.7
(-3)
P 		346.7
(0)
P 		342.3
(-0.4)
P 		68
C 417.2
(1.4)
P 		334
(-3)
P 		382
(-0.4)
P 		446.4
(3)
P 		112
avr 419.9
(3) 		339.7
(-2.6) 		333.4
(-3) 		400.8
(1.7) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 429
1 2 3 4 5 6 range
A 509.5
(0.9)
P 		389.2
(-2.5)
P 		584.7
(3)
P 		369.6
(-3)
P 		545.9
(1.9)
P 		474
(-0.1)
P 		215
B 473.2
(-2.9)
P 		509.7
(-2.1)
P 		622.6
(0.1)
P 		467.1
(-3)
P 		512.2
(-2.1)
P 		764.7
(3)
P 		298
C 351.6
(-2.6)
P 		335.4
(-3)
P 		346.8
(-2.7)
P 		401.9
(-1.4)
P 		382
(-1.9)
P 		582.1
(3)
P 		247
avr 444.8
(-2) 		411.4
(-3) 		518
(0.3) 		412.9
(-3) 		480
(-0.9) 		606.9
(3) 		196
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 168.2
(3)
P 		80.8
(-1.9)
P 		70.9
(-2.4)
P 		60.6
(-3)
P 		108
B 121.3
(3)
P 		77.2
(-2.5)
P 		80.3
(-2.1)
P 		72.9
(-3)
P 		48
C 138.1
(3)
P 		96
(-1)
P 		133.1
(2.5)
P 		75.3
(-3)
P 		63
avr 142.5
(3) 		84.7
(-1.8) 		94.8
(-0.9) 		69.6
(-3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 93.9
(-3)
P 		138.4
(0.8)
P 		127.3
(-0.2)
P 		93.7
(-3)
P 		164.7
(3)
P 		115.4
(-1.2)
P 		71
B 164.6
(-1.5)
P 		169.6
(-1.3)
P 		151.2
(-2)
P 		123.7
(-3)
P 		208.1
(0.1)
P 		285.2
(3)
P 		162
C 130.3
(-0.4)
P 		102.3
(-1.9)
P 		88.3
(-2.6)
P 		80.8
(-3)
P 		123.6
(-0.7)
P 		194.9
(3)
P 		114
avr 129.6
(-1.2) 		136.8
(-0.7) 		122.3
(-1.6) 		99.4
(-3) 		165.5
(1) 		198.5
(3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175361_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20379
Sequence Type Exemplar sequence
Representative Public ID AU116571 NCBI
Target Description AU116571_rc /REP_DB=TREMBL Accession /GB=AU116571 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk746c2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059942(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059942 NCBI Caenorhabditis elegans CYclophyliN family member (cyn-14) (cyn-14) mRNA, complete cds. 11/11 None
F39H2.2a ENSEMBL cdna:known chromosome:CEL140:I:8654576:8659842:1 gene:F39H2.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182005 8/11 Cross Hyb Matching Probes A 
SNAP00000006543 8/11 Cross Hyb Matching Probes None
GENEFINDER00000006548 8/11 Cross Hyb Matching Probes None
F39H2.2b 8/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172664 2 1 NM_059942 175361_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8659314-8659763(+) 100.0 100.0
Public Domain and Genome References
Ensembl F39H2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03088 Hypothetical protein F39H2.2a [Caenorhabditis elegans] emb|CAB10726.2| Hypothetical protein F39H2.2a [Caenorhabditis elegans] ref|NP_492343.2| CYclophyliN family member (cyn-14) [Caenorhabditis elegans] 0.0
blast CAE67083 Hypothetical protein CBG12494 [Caenorhabditis briggsae] 1.0E-175
blast CAD56584 Hypothetical protein F39H2.2b [Caenorhabditis elegans] ref|NP_871805.1| CYclophyliN family member (cyn-14) [Caenorhabditis elegans] 1.0E-159
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.9E-16
Pfam IPR002130 EMBL-EBI Peptidyl-prolyl cis-trans isomerase, cyclophilin type 3.5E-22
Sequence
Target Sequence 
>C. ELEGANS:175361_AT
gaagttctgacaatcatcgtgatcgtgatcgtagctatcgagacaacaaccgtgatcgtc
gtgacaaccatcgggactctgatcgggatcgtcgtcgtcatgatagatctccggatcgga
gacgtgatcgtcgttaacaatttgaatatttaacttatttgtttctctatttgttctttt
cttattcattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTTCTGACAATCATCGTGATCG 435 337 158 Antisense
GATCGTGATCGTAGCTATCGAGACA 184 419 178 Antisense
AGCTATCGAGACAACAACCGTGATC 539 79 190 Antisense
GATCGTCGTGACAACCATCGGGACT 411 417 211 Antisense
CATCGGGACTCTGATCGGGATCGTC 209 213 226 Antisense
TCGGGATCGTCGTCGTCATGATAGA 623 605 240 Antisense
GTCGTCATGATAGATCTCCGGATCG 385 473 251 Antisense
CTCCGGATCGGAGACGTGATCGTCG 697 233 266 Antisense
GTGATCGTCGTTAACAATTTGAATA 138 485 281 Antisense
TTTGTTTCTCTATTTGTTCTTTTCT 554 667 315 Antisense
CTATTTGTTCTTTTCTTATTCATTC 126 225 324 Antisense
Sequence Source Affymetrix Proprietary Database