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[175360_at]

Description AV200500_rc /REP_DB=TREMBL Accession /GB=AV200500 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk576c1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 80      6grp_total > 13      4grp_total > 63      6grp_highest_sub > De      6grp_cgc > 30      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 230.4
(3)
P 		113.1
(-1.3)
P 		144.1
(-0.2)
P 		68.3
(-3)
P 		162
B 201.1
(3)
P 		117.6
(-2.9)
P 		116.3
(-3)
P 		123.6
(-2.5)
P 		85
C 234.2
(3)
P 		135
(-3)
P 		195
(0.6)
P 		142.2
(-2.6)
P 		99
avr 221.9
(3) 		121.9
(-2.4) 		151.8
(-0.8) 		111.4
(-3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 260.4
(3)
P 		219.6
(1.3)
P 		247.9
(2.5)
P 		227.8
(1.6)
P 		116.3
(-3)
P 		116.1
(-3)
P 		144
B 287.9
(1.9)
P 		323.3
(3)
P 		193.1
(-0.9)
P 		225
(0)
P 		124.1
(-3)
P 		137.9
(-2.6)
P 		199
C 254.3
(1.2)
P 		309.4
(3)
P 		225.8
(0.2)
P 		253.8
(1.1)
P 		130.5
(-3)
P 		143.4
(-2.6)
P 		179
avr 267.5
(2.4) 		284.1
(3) 		222.3
(0.7) 		235.5
(1.2) 		123.6
(-3) 		132.5
(-2.7) 		161
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 83.9
(3)
P 		24.5
(-1.8)
P 		37.7
(-0.8)
P 		10
(-3)
P 		74
B 64.1
(3)
P 		29
(-2.6)
P 		26.9
(-2.9)
P 		26.3
(-3)
P 		38
C 77.5
(3)
P 		38.8
(-1.3)
P 		68
(1.9)
P 		24
(-3)
P 		54
avr 75.2
(3) 		30.8
(-1.8) 		44.2
(-0.4) 		20.1
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 48
(-0.6)
P 		78.1
(3)
P 		54
(0.1)
P 		57.8
(0.6)
P 		35.1
(-2.2)
P 		28.3
(-3)
P 		50
B 100.2
(2.3)
P 		107.6
(3)
P 		46.9
(-3)
P 		59.6
(-1.7)
P 		50.4
(-2.7)
P 		51.4
(-2.6)
P 		61
C 94.2
(3)
P 		94.4
(3)
P 		57.5
(-1.2)
P 		51
(-2)
P 		42.2
(-3)
P 		48
(-2.3)
P 		52
avr 80.8
(1.5) 		93.4
(3) 		52.8
(-1.8) 		56.1
(-1.4) 		42.6
(-3) 		42.6
(-3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175360_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22472
Sequence Type Exemplar sequence
Representative Public ID AV200500 NCBI
Target Description AV200500_rc /REP_DB=TREMBL Accession /GB=AV200500 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk576c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T26C11.5 ENSEMBL cdna:known chromosome:CEL140:X:1846671:1848669:-1 gene:T26C11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1846680-1846956(-) 100.0 100.0
Public Domain and Genome References
Ensembl T26C11.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508340 C.Elegans Homeobox family member (ceh-41) [Caenorhabditis elegans] gb|AAC48214.1| C.elegans homeobox protein 41 [Caenorhabditis elegans] 1.0E-126
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 4.99999987368938E-6
Pfam IPR001356 EMBL-EBI Homeobox 8.4E-14
Sequence
Target Sequence 
>C. ELEGANS:175360_AT
atcttatcgagattggtacctgaccattatcaccgattagaaagtagctcaaattcatag
atcattttttccaaagtttcgtcatgaagatttccacaatttttcctaggtcatagctct
ttgaaaagtttcactcttcctagctttgaactgtatggaacgtagaattgattattcttt
attcatctccggtgacctatgtttttcttattctctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTTATCGAGATTGGTACCTGACC 246 31 22 Antisense
GTACCTGACCATTATCACCGATTAG 205 459 37 Antisense
GATCATTTTTTCCAAAGTTTCGTCA 30 419 81 Antisense
GTTTCGTCATGAAGATTTCCACAAT 368 451 97 Antisense
TCCACAATTTTTCCTAGGTCATAGC 646 587 114 Antisense
TTTTCCTAGGTCATAGCTCTTTGAA 222 673 122 Antisense
TGAAAAGTTTCACTCTTCCTAGCTT 518 571 143 Antisense
TCACTCTTCCTAGCTTTGAACTGTA 406 627 152 Antisense
GATTATTCTTTATTCATCTCCGGTG 667 429 191 Antisense
ATTCATCTCCGGTGACCTATGTTTT 218 11 202 Antisense
GACCTATGTTTTTCTTATTCTCTGG 552 383 215 Antisense
Sequence Source Affymetrix Proprietary Database