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[175359_at]

Description AV181810_rc /REP_DB=TREMBL Accession /GB=AV181810 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk625a9 : 3prime end, single read.
Cluster 6grp_total > 09      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 37.9
(1.8)
P 		45.2
(2.8)
A 		4.2
(-3)
A 		46.3
(3)
A 		42
B 27.7
(2.2)
A 		29.4
(2.6)
A 		7.9
(-3)
A 		30.8
(3)
A 		23
C 27.6
(-1.2)
A 		8.4
(-3)
A 		11.3
(-2.7)
A 		73.4
(3)
A 		65
avr 31.1
(0.3) 		27.7
(-0.2) 		7.8
(-3) 		50.2
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 52.2
(3)
P 		26.3
(-0.8)
A 		21
(-1.6)
A 		11.8
(-3)
A 		25.2
(-1)
A 		18.5
(-2)
A 		40
B 20.7
(0.8)
A 		11.1
(-3)
A 		26.4
(3)
A 		21.8
(1.2)
A 		14.6
(-1.6)
A 		16.8
(-0.8)
A 		15
C 50.5
(3)
P 		18
(-1.3)
A 		22.4
(-0.7)
A 		29.4
(0.2)
A 		35
(1)
A 		5
(-3)
A 		46
avr 41.1
(3) 		18.5
(-1.9) 		23.3
(-0.9) 		21
(-1.4) 		24.9
(-0.5) 		13.4
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 13.8
(3)
P 		9.8
(1.1)
A 		1.1
(-3)
A 		6.8
(-0.3)
A 		13
B 8.8
(3)
A 		7.3
(1.7)
A 		1.8
(-3)
A 		6.6
(1.1)
A 		7
C 9.2
(1.1)
A 		2.4
(-3)
A 		3.9
(-2.1)
A 		12.4
(3)
A 		10
avr 10.6
(3) 		6.5
(0) 		2.3
(-3) 		8.6
(1.6) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 9.6
(3)
P 		9.3
(2.7)
A 		4.6
(-1.5)
A 		3
(-3)
A 		7.6
(1.2)
A 		4.5
(-1.6)
A 		7
B 7.2
(3)
A 		3.7
(-3)
A 		6.4
(1.6)
A 		5.8
(0.6)
A 		5.9
(0.8)
A 		6.3
(1.5)
A 		4
C 18.7
(3)
P 		5.5
(-1.7)
A 		5.7
(-1.6)
A 		5.9
(-1.5)
A 		11.3
(0.4)
A 		1.7
(-3)
A 		17
avr 11.8
(3) 		6.2
(-1.4) 		5.6
(-1.9) 		4.9
(-2.4) 		8.3
(0.2) 		4.2
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175359_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20314
Sequence Type Exemplar sequence
Representative Public ID AV181810 NCBI
Target Description AV181810_rc /REP_DB=TREMBL Accession /GB=AV181810 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk625a9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NR_002343(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NR_002343 NCBI Caenorhabditis elegans F16A11.5, miscRNA. 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9383496-9383776(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175359_AT
gcacctttacaaccactttttgtatgtgaggctagtgttttgagaagttacgaagatgat
cgagggtgcgaaagataaggtaccgaaggagagagaaacgagaaaatgagggaaaatgag
tgaaattgagcgaattggagaaaagatgatatcttcggtttcaaatctaactcgaaaact
ttcgaacaatgtacacaggggactcttgaactgcaaacgaccatcagagcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACCTTTACAACCACTTTTTGTAT 241 315 30 Antisense
ACCACTTTTTGTATGTGAGGCTAGT 587 83 41 Antisense
GTGAGGCTAGTGTTTTGAGAAGTTA 210 483 55 Antisense
GTTACGAAGATGATCGAGGGTGCGA 2 447 76 Antisense
GAGGGTGCGAAAGATAAGGTACCGA 532 303 91 Antisense
GATGATATCTTCGGTTTCAAATCTA 113 411 174 Antisense
TTCAAATCTAACTCGAAAACTTTCG 513 583 189 Antisense
CGAAAACTTTCGAACAATGTACACA 295 251 202 Antisense
AATGTACACAGGGGACTCTTGAACT 288 157 217 Antisense
GGGGACTCTTGAACTGCAAACGACC 289 497 227 Antisense
AACTGCAAACGACCATCAGAGCATC 696 141 238 Antisense
Sequence Source Affymetrix Proprietary Database