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[175358_s_at]

Description AV183120_rc /REP_DB=TREMBL Accession /GB=AV183120 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk646g5 : 3prime end, single read.
Cluster 6grp_total > 74      4grp_total > 23      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 358
1 2 3 4 range
A 595.4
(3)
P 		260.3
(-3)
A 		366
(-1.1)
A 		427.8
(-0)
A 		335
B 558.7
(3)
P 		371
(-2.9)
A 		366.6
(-3)
A 		547.4
(2.6)
P 		192
C 617.8
(3)
A 		429.5
(-0.7)
A 		316.4
(-3)
A 		537
(1.4)
P 		301
avr 590.6
(3) 		353.6
(-2.9) 		349.7
(-3) 		504.1
(0.8) 		241

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 503
1 2 3 4 5 6 range
A 394.6
(-3)
A 		537
(-0.5)
P 		549.8
(-0.2)
P 		714.3
(2.7)
P 		668.3
(1.9)
P 		732.7
(3)
P 		338
B 378.6
(-3)
A 		550.5
(-0.5)
P 		591.8
(0.1)
P 		658.7
(1.1)
P 		679.6
(1.4)
P 		787.6
(3)
P 		409
C 306.5
(-3)
A 		471.8
(-1)
P 		555.9
(-0)
P 		809.9
(3)
P 		622.2
(0.8)
P 		595.7
(0.4)
P 		503
avr 359.9
(-3) 		519.8
(-0.4) 		565.8
(0.4) 		727.6
(3) 		656.7
(1.8) 		705.3
(2.6) 		368
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 216.8
(3)
P 		56.5
(-3)
A 		95.7
(-1.5)
A 		62.6
(-2.8)
A 		160
B 178.2
(3)
P 		91.6
(-2.6)
A 		85
(-3)
A 		116.6
(-1)
P 		93
C 204.5
(3)
A 		123.5
(-1.3)
A 		110.3
(-2)
A 		90.5
(-3)
P 		114
avr 199.8
(3) 		90.5
(-3) 		97
(-2.6) 		89.9
(-3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 221
1 2 3 4 5 6 range
A 72.7
(-3)
A 		191
(2.5)
P 		119.7
(-0.8)
P 		181.2
(2)
P 		201.7
(3)
P 		178.4
(1.9)
P 		129
B 131.7
(-3)
A 		183.2
(-1.1)
P 		143.7
(-2.6)
P 		174.5
(-1.4)
P 		276.1
(2.3)
P 		293.7
(3)
P 		162
C 113.6
(-3)
A 		144
(-0.9)
P 		141.5
(-1.1)
P 		162.9
(0.4)
P 		201.3
(3)
P 		199.4
(2.9)
P 		88
avr 106
(-3) 		172.7
(0.3) 		135
(-1.6) 		172.9
(0.3) 		226.4
(3) 		223.8
(2.9) 		120
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175358_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20107
Sequence Type Exemplar sequence
Representative Public ID AV183120 NCBI
Target Description AV183120_rc /REP_DB=TREMBL Accession /GB=AV183120 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk646g5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058838(11), NM_058837(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058838 NCBI Caenorhabditis elegans T03F1.6a (T03F1.6) mRNA, complete cds. 11/11 A 
NM_058837 NCBI Caenorhabditis elegans T03F1.6b (T03F1.6) mRNA, complete cds. 11/11 A 
SNAP00000013112 ENSEMBL cdna:SNAP chromosome:CEL140:I:3839970:3841532:-1 11/11 None
GENEFINDER00000013128 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3839970:3845645:-1 11/11 None
T03F1.6a ENSEMBL cdna:known chromosome:CEL140:I:3839878:3841532:-1 gene:T03F1.6 11/11 A 
T03F1.6b ENSEMBL cdna:known chromosome:CEL140:I:3839883:3841541:-1 gene:T03F1.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3839892-3840217(-) 100.0 100.0
Public Domain and Genome References
Ensembl T03F1.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491239 T03F1.6a [Caenorhabditis elegans] gb|AAB42234.1| Hypothetical protein T03F1.6a [Caenorhabditis elegans] 0.0
blast NP_491238 T03F1.6b [Caenorhabditis elegans] gb|AAK68396.1| Hypothetical protein T03F1.6b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:175358_S_AT
ctgttgtgccacgtcgatgaattccatcacactactccaaatcttcaacatttccattgc
agcctgccacatgatgagaactttcagattgatctctcccaagaattcctggcgttgctc
aatgagccagtccgcaagacccgacagtcaaagtccagctgtccatacaattcgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGTTGTGCCACGTCGATGAATTCC 424 239 14 Antisense
CGATGAATTCCATCACACTACTCCA 588 249 28 Antisense
CACTACTCCAAATCTTCAACATTTC 591 197 43 Antisense
ATTTCCATTGCAGCCTGCCACATGA 608 17 63 Antisense
CATTGCAGCCTGCCACATGATGAGA 554 217 68 Antisense
TTGATCTCTCCCAAGAATTCCTGGC 608 705 102 Antisense
AATTCCTGGCGTTGCTCAATGAGCC 682 177 117 Antisense
TGCTCAATGAGCCAGTCCGCAAGAC 657 579 129 Antisense
TCCGCAAGACCCGACAGTCAAAGTC 511 291 144 Antisense
AGACCCGACAGTCAAAGTCCAGCTG 154 71 150 Antisense
AGTCCAGCTGTCCATACAATTCGAC 493 59 165 Antisense
Sequence Source Affymetrix Proprietary Database