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[175357_at]

Description AV182779_rc /REP_DB=TREMBL Accession /GB=AV182779 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk642e1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 37      4grp_highest_8_8 > 33      4grp_high_8_8 > 51      6grp_highest_nonorm > 73      6grp_total > 35      4grp_total > 61      6grp_highest_sub > Cu      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 578
1 2 3 4 range
A 736.9
(3)
P 		515.8
(0.5)
P 		549.5
(0.8)
P 		215.1
(-3)
P 		522
B 670.4
(3)
P 		646.2
(2.7)
P 		655.3
(2.8)
P 		227.3
(-3)
P 		443
C 753.5
(3)
P 		706.6
(2.5)
P 		649.2
(1.9)
P 		176
(-3)
P 		578
avr 720.3
(3) 		622.9
(1.9) 		618
(1.8) 		206.1
(-3) 		514

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 451
1 2 3 4 5 6 range
A 603.4
(-0.5)
P 		782.4
(3)
P 		471.3
(-3)
P 		536.3
(-1.7)
P 		473.5
(-3)
P 		582.7
(-0.9)
P 		311
B 448.9
(0.3)
P 		506.2
(3)
P 		469.2
(1.2)
P 		445.8
(0.1)
P 		379.4
(-3)
P 		449.6
(0.3)
P 		127
C 830.4
(3)
P 		411.5
(-2.8)
P 		750.3
(1.9)
P 		396.5
(-3)
P 		604.7
(-0.1)
P 		555.4
(-0.8)
P 		434
avr 627.6
(3) 		566.7
(0.8) 		563.6
(0.7) 		459.5
(-3) 		485.9
(-2.1) 		529.2
(-0.5) 		168
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 239
1 2 3 4 range
A 268.3
(3)
P 		112
(-1)
P 		143.7
(-0.2)
P 		31.5
(-3)
P 		237
B 213.8
(3)
P 		159.6
(1)
P 		151.8
(0.8)
P 		48.4
(-3)
P 		165
C 249.4
(3)
P 		203.2
(1.7)
P 		226.2
(2.4)
P 		29.7
(-3)
P 		220
avr 243.8
(3) 		158.3
(0.5) 		173.9
(1) 		36.5
(-3) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 111.2
(-2.7)
P 		278.3
(3)
P 		102.6
(-3)
P 		136
(-1.9)
P 		142.9
(-1.6)
P 		141.9
(-1.7)
P 		176
B 156.2
(1.6)
P 		168.5
(3)
P 		113.9
(-3)
P 		118.1
(-2.5)
P 		154.1
(1.4)
P 		167.6
(2.9)
P 		55
C 307.8
(3)
P 		125.6
(-1.8)
P 		191
(-0.1)
P 		79.7
(-3)
P 		195.7
(0.1)
P 		185.9
(-0.2)
P 		228
avr 191.7
(3) 		190.8
(2.9) 		135.8
(-1.2) 		111.3
(-3) 		164.2
(0.9) 		165.1
(1) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175357_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20539
Sequence Type Exemplar sequence
Representative Public ID AV182779 NCBI
Target Description AV182779_rc /REP_DB=TREMBL Accession /GB=AV182779 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk642e1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064335(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064335 NCBI Caenorhabditis elegans Glycogen SYnthase family member (gsy-1) (gsy-1) mRNA, complete cds. 11/11 None
Y46G5A.31 ENSEMBL cdna:known chromosome:CEL140:II:12866359:12878001:-1 gene:Y46G5A.31 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12866372-12866693(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol gsy-1
Ensembl Y46G5A.31
Entrez Gene 174924 Entrez gene
SwissProt Q9U2D9 EMBL-EBI
WormBase CE24302 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1630044_S_AT dm
DROSGENOME1:141226_AT dm
HG-U133A:201673_S_AT glycogen synthase 1 (muscle) hs
HG-U133_PLUS_2:201673_S_AT glycogen synthase 1 (muscle) hs
HG-FOCUS:201673_S_AT glycogen synthase 1 (muscle) hs
HG-U133A_2:201673_S_AT glycogen synthase 1 (muscle) hs
HUGENEFL:J04501_AT glycogen synthase 1 (muscle) hs
U133_X3P:G4504232_3P_A_AT glycogen synthase 1 (muscle) hs
HG-U95AV2:37299_AT glycogen synthase 1 (muscle) hs
MOE430A:1450196_S_AT glycogen synthase 1, muscle mm
MOUSE430_2:1450196_S_AT glycogen synthase 1, muscle mm
MOUSE430A_2:1450196_S_AT glycogen synthase 1, muscle mm
MOE430A:1450196_S_AT glycogen synthase 3, brain mm
MOUSE430_2:1450196_S_AT glycogen synthase 3, brain mm
MOUSE430A_2:1450196_S_AT glycogen synthase 3, brain mm
MU11KSUBB:MSA.2317.0_F_AT glycogen synthase 3, brain mm
MG-U74AV2:98496_AT glycogen synthase 3, brain mm
MG-U74CV2:169225_AT glycogen synthase 3, brain mm
MOE430A:1416737_AT glycogen synthase 3, brain mm
MOUSE430A_2:1416737_AT glycogen synthase 3, brain mm
MOUSE430_2:1416737_AT glycogen synthase 3, brain mm
MU19KSUBC:TC36244_S_AT Glycogen synthase 1, muscle, mRNA (cDNA clone MGC:25254 IMAGE:3663506) mm
YEAST_2:1779105_AT Glycogen synthase, similar to Gsy1p; expression induced by glucose limitation, nitrogen starvation, heat shock, and stationary phase; activity regulated by cAMP-dependent, Snf1p and Pho85p kinases as well as by the Gac1p-Glc7p phosphatase Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5978 glycogen biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4373 glycogen (starch) synthase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60373 Hypothetical protein Y46G5A.31 [Caenorhabditis elegans] ref|NP_496736.1| Glycogen SYnthase family member (gsy-1) [Caenorhabditis elegans] sp|Q9U2D9|GYS_CAEEL Probable glycogen [starch] synthase 0.0
blast CAE71482 Hypothetical protein CBG18401 [Caenorhabditis briggsae] 0.0
blast AAK28335 glycogen synthase [Steinernema feltiae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008631 EMBL-EBI Glycogen synthase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:175357_AT
atagccatagcctcttcttattataccgttgtcttttcccgtcaccggcgccttatcatt
tctcttttgaataagttcccactcccacccccacaaatttgagatttttaatatgttcct
atatgattcttttttttttacaaaatagacccagttttatttatatacaagattccccgt
attccaatcatctcccagcagctcaaattttatttcgcattttgccacagattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAGCCATAGCCTCTTCTTATTATA 368 23 38 Antisense
CCTCTTCTTATTATACCGTTGTCTT 335 267 48 Antisense
CGCCTTATCATTTCTCTTTTGAATA 394 257 86 Antisense
TCTTTTGAATAAGTTCCCACTCCCA 542 615 100 Antisense
TTGAGATTTTTAATATGTTCCTATA 139 705 136 Antisense
ATGTTCCTATATGATTCTTTTTTTT 314 47 150 Antisense
ATAGACCCAGTTTTATTTATATACA 264 21 182 Antisense
TACAAGATTCCCCGTATTCCAATCA 34 641 203 Antisense
CAATCATCTCCCAGCAGCTCAAATT 212 181 222 Antisense
CAGCTCAAATTTTATTTCGCATTTT 700 203 236 Antisense
TTATTTCGCATTTTGCCACAGATTT 341 679 247 Antisense
Sequence Source Affymetrix Proprietary Database