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[175355_s_at]

Description AV199325_rc /REP_DB=TREMBL Accession /GB=AV199325 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk544d2 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 98      6grp_total > 95      4grp_total > 04      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 504
1 2 3 4 range
A 170.1
(-1.7)
P 		70
(-3)
A 		99
(-2.6)
M 		548.6
(3)
P 		479
B 254.8
(-0.3)
P 		80.3
(-2.9)
A 		74.2
(-3)
A 		481.4
(3)
P 		407
C 108.5
(-2.2)
P 		84.7
(-2.5)
P 		44.7
(-3)
A 		518
(3)
P 		473
avr 177.8
(-1.6) 		78.3
(-2.9) 		72.6
(-3) 		516
(3) 		443

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 159.8
(-2.7)
M 		151
(-3)
P 		197.4
(-1.4)
P 		162.1
(-2.6)
P 		321.2
(3)
P 		295.7
(2.1)
P 		170
B 180.8
(-1)
P 		141.3
(-2.2)
P 		112.2
(-3)
P 		249.7
(1)
P 		260.1
(1.3)
P 		320.2
(3)
P 		208
C 109.3
(-3)
P 		131.8
(-2.3)
P 		113.5
(-2.9)
M 		306.3
(3)
P 		260.1
(1.6)
P 		300.9
(2.8)
P 		197
avr 150
(-2.7) 		141.4
(-3) 		141
(-3) 		239.4
(0.6) 		280.5
(2.1) 		305.6
(3) 		165
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 61.9
(1.3)
P 		15.2
(-3)
A 		25.9
(-2)
M 		80.3
(3)
P 		65
B 81.3
(1.5)
P 		19.8
(-2.8)
A 		17.2
(-3)
A 		102.6
(3)
P 		85
C 35.9
(-1.3)
P 		24.4
(-2.3)
P 		15.6
(-3)
A 		87.3
(3)
P 		72
avr 59.7
(0.4) 		19.8
(-3) 		19.6
(-3) 		90.1
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 29.5
(-3)
M 		53.7
(-0.8)
P 		43
(-1.8)
P 		41.1
(-2)
P 		96.9
(3)
P 		72
(0.8)
P 		67
B 62.9
(-0.7)
P 		47
(-1.7)
P 		27.2
(-3)
P 		66.1
(-0.5)
P 		105.7
(2.1)
P 		119.4
(3)
P 		92
C 40.5
(-2)
P 		40.2
(-2.1)
P 		28.9
(-3)
M 		61.6
(-0.3)
P 		84.2
(1.6)
P 		100.7
(3)
P 		72
avr 44.3
(-1.9) 		47
(-1.7) 		33
(-3) 		56.3
(-0.8) 		95.6
(2.8) 		97.4
(3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175355_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20693
Sequence Type Exemplar sequence
Representative Public ID AV199325 NCBI
Target Description AV199325_rc /REP_DB=TREMBL Accession /GB=AV199325 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk544d2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062418(11), NM_062419(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062418 NCBI Caenorhabditis elegans F35D11.11b (F35D11.11) mRNA, complete cds. 11/11 A 
NM_062419 NCBI Caenorhabditis elegans F35D11.11c (F35D11.11) mRNA, complete cds. 11/11 A 
F35D11.11b ENSEMBL cdna:known chromosome:CEL140:II:4627860:4637616:-1 gene:F35D11.11 11/11 A 
F35D11.11c ENSEMBL cdna:known chromosome:CEL140:II:4627869:4637616:-1 gene:F35D11.11 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182228 5/11 Cross Hyb Matching Probes A 
SNAP00000013546 1/11 Cross Hyb Matching Probes None
GENEFINDER00000013554 5/11 Cross Hyb Matching Probes None
F35D11.11d 5/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173801 4 2 NM_062418 175355_s_at (11)
NM_062419 175355_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4627877-4628155(-) 100.0 100.0
Public Domain and Genome References
Ensembl F35D11.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL02510 Hypothetical protein F35D11.11b [Caenorhabditis elegans] ref|NP_494819.1| F35D11.11b [Caenorhabditis elegans] 0.0
blast AAL02511 Hypothetical protein F35D11.11c [Caenorhabditis elegans] ref|NP_494820.1| F35D11.11c [Caenorhabditis elegans] 0.0
blast AAA68757 Hypothetical protein F35D11.11a [Caenorhabditis elegans] ref|NP_494821.1| F35D11.11a [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:175355_S_AT
ttatcacattctggctctttcaattcgggtactcttattatgtgaatgggttattttaag
ctcattcgcttttatagaatcaaagttttttaaagacttgctttgattttcaattttcag
acggaagggaagccagaatccggagagagtctgacaacggccatcttcagcattaatgaa
gacacttttactttgaaacgaacaaatttttccctagtgtagctgcttaagatgctcctt
tgtcacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATCACATTCTGGCTCTTTCAATT 690 679 13 Antisense
GGAAGGGAAGCCAGAATCCGGAGAG 650 531 135 Antisense
GGAAGCCAGAATCCGGAGAGAGTCT 314 529 140 Antisense
GAGAGAGTCTGACAACGGCCATCTT 663 393 155 Antisense
TCTGACAACGGCCATCTTCAGCATT 65 607 162 Antisense
CAACGGCCATCTTCAGCATTAATGA 445 187 167 Antisense
GCATTAATGAAGACACTTTTACTTT 548 305 182 Antisense
GAACAAATTTTTCCCTAGTGTAGCT 431 351 212 Antisense
ATTTTTCCCTAGTGTAGCTGCTTAA 615 13 218 Antisense
GTGTAGCTGCTTAAGATGCTCCTTT 152 487 229 Antisense
TGCTTAAGATGCTCCTTTGTCACGT 686 577 236 Antisense
Sequence Source Affymetrix Proprietary Database