[Home] | [Total List]

[175354_at]

Description AV184287_rc /REP_DB=TREMBL Accession /GB=AV184287 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk662e1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 18      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 60      6grp_total > 16      4grp_total > 31      6grp_highest_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 732
1 2 3 4 range
A 902
(3)
P 		331.1
(-2.5)
P 		278.8
(-3)
P 		519.2
(-0.7)
P 		623
B 936.3
(3)
P 		283.7
(-2.7)
P 		247
(-3)
P 		589.2
(-0)
P 		689
C 785.1
(3)
P 		295.5
(-2.1)
P 		203.9
(-3)
P 		462.4
(-0.3)
P 		581
avr 874.5
(3) 		303.4
(-2.4) 		243.2
(-3) 		523.6
(-0.3) 		631

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 645
1 2 3 4 5 6 range
A 816.8
(3)
P 		477.5
(-0.3)
P 		327.9
(-1.8)
P 		263.3
(-2.4)
P 		374.5
(-1.3)
P 		204.9
(-3)
P 		612
B 792.3
(3)
P 		500.8
(0.1)
P 		195.7
(-3)
P 		227.6
(-2.7)
P 		287.3
(-2.1)
P 		326
(-1.7)
P 		597
C 794.8
(3)
P 		504.2
(0.2)
P 		172
(-3)
P 		185.8
(-2.9)
P 		272.2
(-2)
P 		335.9
(-1.4)
P 		623
avr 801.3
(3) 		494.2
(-0.2) 		231.9
(-2.9) 		225.6
(-3) 		311.3
(-2.1) 		288.9
(-2.3) 		576
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 271
1 2 3 4 range
A 328.4
(3)
P 		71.9
(-3)
P 		72.9
(-3)
P 		76
(-2.9)
P 		257
B 298.6
(3)
P 		70.1
(-2.7)
P 		57.2
(-3)
P 		125.6
(-1.3)
P 		241
C 259.9
(3)
P 		84.9
(-2.6)
P 		71.1
(-3)
P 		78
(-2.8)
P 		189
avr 295.6
(3) 		75.6
(-2.8) 		67.1
(-3) 		93.2
(-2.3) 		229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 257
1 2 3 4 5 6 range
A 150.6
(2)
P 		169.8
(3)
P 		71.4
(-1.9)
P 		66.8
(-2.2)
P 		113
(0.2)
P 		49.9
(-3)
P 		120
B 275.7
(3)
P 		166.7
(0.1)
P 		47.5
(-3)
P 		60.3
(-2.7)
P 		116.7
(-1.2)
P 		121.6
(-1.1)
P 		228
C 294.6
(3)
P 		153.8
(-0.3)
P 		43.8
(-2.9)
P 		37.4
(-3)
P 		88.1
(-1.8)
P 		112.4
(-1.3)
P 		257
avr 240.3
(3) 		163.4
(0.5) 		54.2
(-3) 		54.8
(-3) 		105.9
(-1.3) 		94.6
(-1.7) 		186
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175354_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22318
Sequence Type Exemplar sequence
Representative Public ID AV184287 NCBI
Target Description AV184287_rc /REP_DB=TREMBL Accession /GB=AV184287 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk662e1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029162(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029162 NCBI Caenorhabditis elegans C02C6.2a (C02C6.2) mRNA, complete cds. 11/11 None
C02C6.2 ENSEMBL cdna:known chromosome:CEL140:X:15542929:15546578:1 gene:C02C6.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181642 2 1 NM_001029162 175354_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15545951-15546231(+) 90.0 100.0
Public Domain and Genome References
Ensembl C02C6.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI79132 Hypothetical protein C02C6.2a [Caenorhabditis elegans] ref|NP_001024333.1| C02C6.2a [Caenorhabditis elegans] 0.0
blast CAB01856 Hypothetical protein C02C6.2b [Caenorhabditis elegans] ref|NP_001024334.1| C02C6.2b [Caenorhabditis elegans] 0.0
blast CAE63326 Hypothetical protein CBG07722 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024333.1 2 290-312,460-482
C02C6.2 3 264-281,285-307,453-475
Sequence
Target Sequence 
>C. ELEGANS:175354_AT
ttcacacacacatctgcatttactttagaccatctacccacatttctcattcactcatct
gatcgtcaaaatttcacttaaagttcaatacaatcagttagacgcgaatactttctcagt
gttcggcatttgctgaaaaacgctgatactcaaaaacggttcatcctgtctctcttcctc
tcaacgactactatatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACACACACATCTGCATTTACTT 164 687 15 Antisense
TACTTTAGACCATCTACCCACATTT 218 623 35 Antisense
CACATTTCTCATTCACTCATCTGAT 70 197 53 Antisense
CTCATTCACTCATCTGATCGTCAAA 662 229 60 Antisense
GATCGTCAAAATTTCACTTAAAGTT 702 377 75 Antisense
AGTTCAATACAATCAGTTAGACGCG 59 63 96 Antisense
GTTAGACGCGAATACTTTCTCAGTG 385 445 111 Antisense
CTTTCTCAGTGTTCGGCATTTGCTG 279 223 125 Antisense
GGCATTTGCTGAAAAACGCTGATAC 145 537 139 Antisense
CAAAAACGGTTCATCCTGTCTCTCT 467 191 165 Antisense
CTTCCTCTCAACGACTACTATATCA 580 219 188 Antisense
Sequence Source Affymetrix Proprietary Database