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[175353_s_at]

Description AV199537_rc /REP_DB=TREMBL Accession /GB=AV199537 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk547h4 : 3prime end, single read.
Cluster 6grp_total > 67      4grp_total > 04      6grp_cgc > 38      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 422
1 2 3 4 range
A 128.5
(0.8)
M 		11.8
(-3)
A 		22.2
(-2.7)
A 		194.4
(3)
A 		183
B 103.9
(-1.3)
A 		20.3
(-2.7)
A 		3.9
(-3)
A 		360.5
(3)
P 		357
C 24.5
(-2.8)
A 		13.3
(-2.9)
A 		8
(-3)
A 		426.2
(3)
M 		418
avr 85.6
(-1.6) 		15.1
(-2.9) 		11.4
(-3) 		327
(3) 		316

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 10.7
(3)
A 		6.6
(-0.2)
A 		3.8
(-2.4)
A 		3.2
(-2.8)
A 		3
(-3)
A 		4.2
(-2.1)
A 		8
B 13.3
(-2.1)
A 		4.3
(-2.8)
A 		5.5
(-2.7)
A 		14.5
(-2)
A 		1.7
(-3)
A 		78.4
(3)
A 		77
C 6
(-2.2)
A 		7.9
(-1.8)
A 		7.3
(-1.9)
A 		4.8
(-2.5)
A 		2.2
(-3)
A 		31
(3)
A 		29
avr 10
(-1.7) 		6.3
(-2.3) 		5.5
(-2.5) 		7.5
(-2.1) 		2.3
(-3) 		37.9
(3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 46.8
(3)
M 		2.6
(-3)
A 		5.8
(-2.6)
A 		28.5
(0.5)
A 		44
B 33.1
(-0.5)
A 		5
(-2.7)
A 		0.9
(-3)
A 		76.8
(3)
P 		76
C 8.1
(-2.5)
A 		3.8
(-2.9)
A 		2.8
(-3)
A 		71.9
(3)
M 		69
avr 29.3
(-0.2) 		3.8
(-2.9) 		3.2
(-3) 		59.1
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 2
(1.5)
A 		2.4
(3)
A 		0.8
(-3)
A 		0.8
(-3)
A 		0.9
(-2.6)
A 		1
(-2.3)
A 		2
B 4.6
(-2.2)
A 		1.4
(-2.9)
A 		1.3
(-2.9)
A 		3.8
(-2.3)
A 		0.7
(-3)
A 		29.2
(3)
A 		29
C 2.2
(-2.1)
A 		2.4
(-1.9)
A 		1.8
(-2.3)
A 		1
(-2.8)
A 		0.7
(-3)
A 		10.4
(3)
A 		10
avr 2.9
(-2) 		2.1
(-2.4) 		1.3
(-2.8) 		1.9
(-2.5) 		0.8
(-3) 		13.5
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175353_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20420
Sequence Type Exemplar sequence
Representative Public ID AV199537 NCBI
Target Description AV199537_rc /REP_DB=TREMBL Accession /GB=AV199537 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk547h4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025814(11), NM_001025819(11), NM_001025813(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025814 NCBI Caenorhabditis elegans UNCoordinated family member (unc-89) (unc-89) mRNA, complete cds. 11/11 None
NM_001025819 NCBI Caenorhabditis elegans UNCoordinated family member (unc-89) (unc-89) mRNA, complete cds. 11/11 None
NM_001025813 NCBI Caenorhabditis elegans UNCoordinated family member (unc-89) (unc-89) mRNA, complete cds. 11/11 None
C09D1.1a ENSEMBL cdna:known chromosome:CEL140:I:4035894:4078128:1 gene:C09D1.1 11/11 A 
C09D1.1b ENSEMBL cdna:known chromosome:CEL140:I:4035894:4090875:1 gene:C09D1.1 11/11 A 
C09D1.1g ENSEMBL cdna:known chromosome:CEL140:I:4035894:4084508:1 gene:C09D1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171990 7 3 NM_001025813 175353_s_at (11), 192998_at (11)
NM_001025814 174686_at (11), 175353_s_at (11), 189196_at (11), 192998_at (11)
NM_001025815 189196_at (11)
NM_001025816 189196_at (11)
NM_001025817 174492_at (11), 192998_at (11)
NM_001025818 189196_at (11), 192998_at (11)
NM_001025819 175353_s_at (11), 192998_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4056206-4056486(+) 100.0 100.0
Public Domain and Genome References
Ensembl C09D1.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP68958 Uncoordinated protein 89, isoform b [Caenorhabditis elegans] ref|NP_001020985.1| UNCoordinated family member (unc-89) [Caenorhabditis elegans] 0.0
blast AAV34800 Uncoordinated protein 89, isoform f [Caenorhabditis elegans] ref|NP_001020989.1| UNCoordinated family member (unc-89) [Caenorhabditis elegans] 0.0
blast AAV34801 Uncoordinated protein 89, isoform g [Caenorhabditis elegans] ref|NP_001020990.1| UNCoordinated family member (unc-89) [Caenorhabditis elegans] 0.0
blast AAB54132 Uncoordinated protein 89, isoform a [Caenorhabditis elegans] ref|NP_001020984.1| UNCoordinated family member (unc-89) [Caenorhabditis elegans] sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 (Uncoordinated protein 89) 0.0
Protein Families
Method ID Description E-Value
hanks 2.1.17 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; TWITCH 4.0E-37
hanks 2.1.15 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; MLCK-M 1.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.4E-14
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.3E-12
Pfam IPR000719 EMBL-EBI Protein kinase 1.4E-41
Pfam IPR000719 EMBL-EBI Protein kinase 2.9E-30
Pfam IPR001849 EMBL-EBI Pleckstrin-like 1.9E-8
Pfam IPR007850 EMBL-EBI RCSD 1.4E-35
Pfam IPR007850 EMBL-EBI RCSD 2.0E-50
Pfam IPR007850 EMBL-EBI RCSD 7.5E-38
Pfam IPR007850 EMBL-EBI RCSD 1.1E-30
Pfam IPR007850 EMBL-EBI RCSD 3.4E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.8E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.6E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.021
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.5E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.34
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.024
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0023
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.0E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.68
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.8E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.15
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.9E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.12
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0069
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.1E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.6E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.9E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.1E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.2E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.2E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.6E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.77
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.06
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.9E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.1E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.018
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.069
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0093
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.3
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.066
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.014
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.6E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.7E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.5E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.4E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.4E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.7E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.9E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.6E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.018
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0098
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.5E-6
Pfam IPR000719 EMBL-EBI Protein kinase 1.2E-36
Sequence
Target Sequence 
>C. ELEGANS:175353_S_AT
tgaaaaaccaaagagcccgacgaagaaggacaaatcaccagaaaagtctattaccgagga
gatcaagtcacctgtcaaaaaagagaaatctccggagaaggtggaagagaaaccagctag
tcctaccaagaaagagaagtctccagaaaaaccagcttcgccgacaaagaagtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAAAACCAAAGAGCCCGACGAAG 654 569 16 Antisense
AGAGCCCGACGAAGAAGGACAAATC 294 69 27 Antisense
GGACAAATCACCAGAAAAGTCTATT 107 525 43 Antisense
AAGTCTATTACCGAGGAGATCAAGT 374 153 59 Antisense
GGAGATCAAGTCACCTGTCAAAAAA 710 515 73 Antisense
GAGAAATCTCCGGAGAAGGTGGAAG 217 391 98 Antisense
GAAGAGAAACCAGCTAGTCCTACCA 206 337 119 Antisense
AACCAGCTAGTCCTACCAAGAAAGA 693 143 126 Antisense
AGTCTCCAGAAAAACCAGCTTCGCC 528 61 153 Antisense
GAAAAACCAGCTTCGCCGACAAAGA 152 355 161 Antisense
ACCAGCTTCGCCGACAAAGAAGTCG 187 85 166 Antisense
Sequence Source Affymetrix Proprietary Database