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[175352_s_at]

Description AV180912_rc /REP_DB=TREMBL Accession /GB=AV180912 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk613f7 : 3prime end, single read.
Cluster 6grp_total > 37      4grp_total > 19      6grp_cgc > 17      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 262
1 2 3 4 range
A 178
(-2.5)
P 		288.6
(0.1)
M 		156.5
(-3)
A 		413.7
(3)
P 		257
B 180.3
(-2.5)
A 		253.6
(-0.2)
A 		165.6
(-3)
A 		355.9
(3)
P 		190
C 216.7
(-0.7)
A 		212.4
(-0.9)
A 		151.9
(-3)
A 		324.3
(3)
P 		172
avr 191.7
(-2) 		251.5
(-0.3) 		158
(-3) 		364.6
(3) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 137.5
(2.5)
A 		119.9
(1.4)
A 		82.4
(-0.9)
A 		69.2
(-1.8)
A 		49.6
(-3)
A 		144.9
(3)
M 		95
B 169.1
(3)
A 		112.3
(0.4)
A 		94.8
(-0.4)
A 		38.6
(-3)
A 		77.4
(-1.2)
A 		154.2
(2.3)
P 		131
C 165.7
(3)
M 		99.4
(-0.1)
A 		37.6
(-3)
A 		46
(-2.6)
A 		65.7
(-1.7)
A 		135
(1.6)
A 		128
avr 157.4
(3) 		110.5
(0.3) 		71.6
(-1.9) 		51.3
(-3) 		64.2
(-2.3) 		144.7
(2.3) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 64.8
(3)
P 		62.7
(2.5)
M 		40.9
(-3)
A 		60.6
(1.9)
P 		24
B 57.5
(0.1)
A 		62.6
(0.9)
A 		38.4
(-3)
A 		75.8
(3)
P 		37
C 71.7
(3)
A 		61.1
(-0.4)
A 		52.9
(-3)
A 		54.7
(-2.4)
P 		19
avr 64.7
(3) 		62.1
(2.2) 		44.1
(-3) 		63.7
(2.7) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 25.3
(-0.8)
A 		42.7
(3)
A 		18
(-2.4)
A 		17.5
(-2.5)
A 		15
(-3)
A 		35.3
(1.4)
M 		28
B 58.8
(3)
A 		37.4
(0.4)
A 		23
(-1.4)
A 		10.2
(-3)
A 		31.5
(-0.4)
A 		57.5
(2.8)
P 		49
C 61.4
(3)
M 		30.3
(-0.6)
A 		9.6
(-3)
A 		9.2
(-3)
A 		21.3
(-1.6)
A 		45.2
(1.1)
A 		52
avr 48.5
(3) 		36.8
(1.1) 		16.9
(-2.2) 		12.3
(-3) 		22.6
(-1.3) 		46
(2.6) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175352_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20690
Sequence Type Exemplar sequence
Representative Public ID AV180912 NCBI
Target Description AV180912_rc /REP_DB=TREMBL Accession /GB=AV180912 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk613f7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061877(11), NM_061876(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061877 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-42) (pqn-42) mRNA, complete cds. 11/11 A 
NM_061876 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-42) (pqn-42) mRNA, complete cds. 11/11 A 
SNAP00000030755 ENSEMBL cdna:SNAP chromosome:CEL140:II:2453062:2454992:-1 11/11 None
F53G2.4a ENSEMBL cdna:known chromosome:CEL140:II:2452989:2458982:-1 gene:F53G2.4 11/11 None
F53G2.4b ENSEMBL cdna:known chromosome:CEL140:II:2453053:2460188:-1 gene:F53G2.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000030759 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2453059-2453518(-) 100.0 100.0
Public Domain and Genome References
Ensembl F53G2.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN84804 Prion-like-(q/n-rich)-domain-bearing protein protein 42, isoform a [Caenorhabditis elegans] ref|NP_494278.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-42) [Caenorhabditis elegans] 0.0
blast AAN84805 Prion-like-(q/n-rich)-domain-bearing protein protein 42, isoform b [Caenorhabditis elegans] ref|NP_494277.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-42) [Caenorhabditis elegans] 0.0
blast AAN84805 Prion-like-(q/n-rich)-domain-bearing protein protein 42, isoform b [Caenorhabditis elegans] ref|NP_494277.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-42) [Caenorhabditis elegans] 1.0E-135
blast AAN84804 Prion-like-(q/n-rich)-domain-bearing protein protein 42, isoform a [Caenorhabditis elegans] ref|NP_494278.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-42) [Caenorhabditis elegans] 1.0E-125
Sequence
Target Sequence 
>C. ELEGANS:175352_S_AT
gctgtcataacctgttcgtgaccgatgacgcatgctgccctcaggccgcagctcgtcggt
actggtcgacggcctacgaagtttgtatgcctacagtaaccgtcgacttctcgccggtcc
gattcgaggtgcacttcacagaaggagtccgagtgctcgacctgtccgtggataggcaat
gggaattcaattgcacctacggtgacaagcaaccgcagttcgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGTCATAACCTGTTCGTGACCGA 80 293 14 Antisense
CGCAGCTCGTCGGTACTGGTCGACG 377 253 60 Antisense
TACTGGTCGACGGCCTACGAAGTTT 636 645 73 Antisense
ACGGCCTACGAAGTTTGTATGCCTA 174 91 82 Antisense
TGTATGCCTACAGTAACCGTCGACT 254 561 97 Antisense
GGTGCACTTCACAGAAGGAGTCCGA 309 501 141 Antisense
AGAAGGAGTCCGAGTGCTCGACCTG 320 73 153 Antisense
CCTGTCCGTGGATAGGCAATGGGAA 1 263 174 Antisense
TGGGAATTCAATTGCACCTACGGTG 201 551 193 Antisense
GCACCTACGGTGACAAGCAACCGCA 449 315 206 Antisense
CGGTGACAAGCAACCGCAGTTCGCC 193 245 213 Antisense
Sequence Source Affymetrix Proprietary Database