[Home] | [Total List]

[175351_at]

Description AV199339_rc /REP_DB=TREMBL Accession /GB=AV199339 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk544e9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 90      6grp_total > 99      4grp_total > 16      6grp_highest_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 118.5
(-3)
P 		145.9
(-1.2)
P 		131.9
(-2.1)
P 		209.9
(3)
P 		91
B 118
(-2.7)
P 		114
(-3)
P 		173
(1.3)
P 		197.2
(3)
P 		83
C 98.2
(-3)
P 		131.4
(-1.6)
P 		179.6
(0.5)
P 		238.7
(3)
P 		141
avr 111.6
(-3) 		130.4
(-1.9) 		161.5
(-0.1) 		215.3
(3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 107.8
(-3)
P 		124.6
(-1.6)
P 		145.2
(0.2)
P 		178.1
(3)
P 		167.4
(2.1)
P 		145.5
(0.2)
P 		70
B 131.8
(-2.1)
P 		107.9
(-3)
P 		198.6
(0.3)
P 		106.7
(-3)
P 		274.8
(3)
P 		220.2
(1.1)
P 		168
C 168.9
(-0.3)
P 		121
(-2.8)
P 		117.6
(-3)
P 		131.1
(-2.3)
P 		231
(3)
P 		205.3
(1.6)
P 		113
avr 136.2
(-2) 		117.8
(-3) 		153.8
(-1) 		138.6
(-1.8) 		224.4
(3) 		190.3
(1.1) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 43.2
(3)
P 		31.7
(-2.5)
P 		34.5
(-1.2)
P 		30.7
(-3)
P 		13
B 37.6
(1.1)
P 		28.2
(-3)
P 		40.1
(2.2)
P 		42
(3)
P 		14
C 32.5
(-3)
P 		37.8
(-1.9)
P 		62.6
(3)
P 		40.3
(-1.4)
P 		30
avr 37.8
(-0.6) 		32.6
(-3) 		45.7
(3) 		37.7
(-0.7) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 19.9
(-3)
P 		44.3
(1.8)
P 		31.6
(-0.7)
P 		45.2
(2)
P 		50.5
(3)
P 		35.4
(0)
P 		31
B 45.9
(-1.7)
P 		35.9
(-2.5)
P 		48.2
(-1.6)
P 		28.3
(-3)
P 		111.7
(3)
P 		82.1
(0.9)
P 		83
C 62.6
(1.5)
P 		36.9
(-1.7)
P 		29.9
(-2.6)
P 		26.4
(-3)
P 		74.8
(3)
P 		68.7
(2.2)
P 		48
avr 42.8
(-1.8) 		39
(-2.3) 		36.6
(-2.6) 		33.3
(-3) 		79
(3) 		62.1
(0.8) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175351_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21195
Sequence Type Exemplar sequence
Representative Public ID AV199339 NCBI
Target Description AV199339_rc /REP_DB=TREMBL Accession /GB=AV199339 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk544e9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067091(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067091 NCBI Caenorhabditis elegans Y66D12A.10 (Y66D12A.10) mRNA, complete cds. 11/11 None
SNAP00000020816 ENSEMBL cdna:SNAP chromosome:CEL140:III:11565788:11567768:1 11/11 None
GENEFINDER00000020843 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11565788:11567768:1 11/11 None
Y66D12A.10 ENSEMBL cdna:known chromosome:CEL140:III:11565744:11567867:1 gene:Y66D12A.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11566360-11567802(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y66D12A.10
Entrez Gene 176587 Entrez gene
SwissProt Q95Q05 EMBL-EBI
WormBase CE28792 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1589940_AT similar to CG14985-PA cfa
CANINE_2:CFA.13593.1.S1_S_AT similar to CG14985-PA cfa
CANINE_2:CFAAFFX.4313.1.S1_AT similar to CG14985-PA cfa
DROSOPHILA_2:1636713_AT dm
DROSGENOME1:148137_AT dm
CHICKEN:GGAAFFX.10735.1.S1_AT similar to hypothetical protein BC018453 gga
HU35KSUBC:RC_D60087_F_AT hypothetical protein BC018453 hs
HU35KSUBD:RC_T78015_AT hypothetical protein BC018453 hs
U133_X3P:HS.14222.1.S1_3P_A_AT hypothetical protein BC018453 hs
HG-U133_PLUS_2:226329_S_AT hypothetical protein BC018453 hs
HG-U133B:226329_S_AT hypothetical protein BC018453 hs
HG-U95C:65431_S_AT hypothetical protein BC018453 hs
HG-U95E:77949_AT hypothetical protein BC018453 hs
HG-U95E:78497_R_AT hypothetical protein BC018453 hs
MOUSE430_2:1439261_X_AT RIKEN cDNA 1500032H18 gene mm
MOE430A:1439261_X_AT RIKEN cDNA 1500032H18 gene mm
MOUSE430A_2:1439261_X_AT RIKEN cDNA 1500032H18 gene mm
MOE430A:1426133_A_AT RIKEN cDNA 1500032H18 gene mm
MOUSE430A_2:1426133_A_AT RIKEN cDNA 1500032H18 gene mm
MOUSE430_2:1426133_A_AT RIKEN cDNA 1500032H18 gene mm
MG-U74BV2:110351_AT RIKEN cDNA 1500032H18 gene mm
MOUSE430_2:1451552_AT RIKEN cDNA 1500032H18 gene, mRNA (cDNA clone MGC:28063 IMAGE:3709157) mm
MOE430A:1451552_AT RIKEN cDNA 1500032H18 gene, mRNA (cDNA clone MGC:28063 IMAGE:3709157) mm
MOUSE430A_2:1451552_AT RIKEN cDNA 1500032H18 gene, mRNA (cDNA clone MGC:28063 IMAGE:3709157) mm
MU19KSUBB:TC32102_AT RIKEN cDNA 1500032H18 gene, mRNA (cDNA clone MGC:28063 IMAGE:3709157) mm
RG-U34C:RC_AI178386_AT similar to hypothetical protein BC018453 (predicted) rn
RAE230B:1393085_AT similar to hypothetical protein BC018453 (predicted) rn
RAT230_2:1393085_AT similar to hypothetical protein BC018453 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAC70132 Hypothetical protein Y66D12A.10 [Caenorhabditis elegans] ref|NP_499492.1| Y66D12A.10 [Caenorhabditis elegans] 1.0E-131
blast CAC70132 Hypothetical protein Y66D12A.10 [Caenorhabditis elegans] ref|NP_499492.1| Y66D12A.10 [Caenorhabditis elegans] 1.0E-124
blast CAE67693 Hypothetical protein CBG13261 [Caenorhabditis briggsae] 2.0E-99
blast CAE67693 Hypothetical protein CBG13261 [Caenorhabditis briggsae] 4.0E-93
blast NP_001009714 hypothetical protein LOC363219 [Rattus norvegicus] gb|AAH88263.1| Similar to hypothetical protein BC018453 (predicted) [Rattus norvegicus] 3.0E-34
Sequence
Target Sequence 
>C. ELEGANS:175351_AT
gaatcaggcagagttcgaggaactctcaaaaagccttgcgaagcgcggagtgatgttcaa
cgtcgagttcagcacgacaattcatgatcgggaaattatattcgacaacggttgggtggt
gaaaagtggccgcgggctcgactatttcaaagcttccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCAGGCAGAGTTCGAGGAACTC 475 327 13 Antisense
GAGGAACTCTCAAAAAGCCTTGCGA 433 403 29 Antisense
AAAGCCTTGCGAAGCGCGGAGTGAT 32 123 42 Antisense
AGCGCGGAGTGATGTTCAACGTCGA 294 75 54 Antisense
GATGTTCAACGTCGAGTTCAGCACG 163 409 64 Antisense
TCGAGTTCAGCACGACAATTCATGA 81 603 75 Antisense
AATTATATTCGACAACGGTTGGGTG 526 129 106 Antisense
GGTTGGGTGGTGAAAAGTGGCCGCG 311 503 122 Antisense
TGGTGAAAAGTGGCCGCGGGCTCGA 633 551 129 Antisense
CGCGGGCTCGACTATTTCAAAGCTT 423 255 143 Antisense
GGGCTCGACTATTTCAAAGCTTCCG 156 493 146 Antisense
Sequence Source Affymetrix Proprietary Database