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[175350_at]

Description AV178202_rc /REP_DB=TREMBL Accession /GB=AV178202 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk561g1 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 92      6grp_total > 34      4grp_total > 05      6grp_high1_sub > 04_05      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 31.9
(-1.1)
P 		17.7
(-3)
A 		27.9
(-1.6)
A 		62.4
(3)
A 		45
B 37.3
(0.5)
P 		26.5
(-1.4)
A 		51.7
(3)
M 		17.2
(-3)
A 		35
C 26.9
(0.3)
A 		26.7
(0.2)
A 		1.5
(-3)
A 		48.2
(3)
A 		47
avr 32
(-0.3) 		23.6
(-3) 		27
(-1.9) 		42.6
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 30.3
(-0.4)
A 		42.1
(2.7)
P 		27.1
(-1.2)
P 		42.7
(2.8)
P 		43.3
(3)
P 		20.3
(-3)
A 		23
B 35.4
(0.3)
P 		23.8
(-1.8)
A 		50.5
(3)
A 		17.3
(-3)
A 		19.8
(-2.5)
A 		25.5
(-1.5)
A 		33
C 36.5
(2.2)
A 		37.5
(2.4)
P 		27.7
(0.3)
A 		25.3
(-0.2)
A 		11.6
(-3)
A 		40.6
(3)
P 		29
avr 34.1
(2.4) 		34.5
(2.6) 		35.1
(3) 		28.4
(-0.9) 		24.9
(-3) 		28.8
(-0.7) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 11.6
(3)
P 		3.8
(-3)
A 		7.3
(-0.3)
A 		9.1
(1.1)
A 		8
B 11.9
(2.9)
P 		6.5
(-1)
A 		12
(3)
M 		3.7
(-3)
A 		8
C 8.9
(3)
A 		7.7
(2.1)
A 		0.5
(-3)
A 		8.1
(2.4)
A 		8
avr 10.8
(3) 		6
(-3) 		6.6
(-2.3) 		7
(-1.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 5.6
(-2.6)
A 		15
(3)
P 		5.9
(-2.5)
P 		10.8
(0.5)
P 		13.1
(1.9)
P 		5
(-3)
A 		10
B 12.3
(3)
P 		7.9
(-0.4)
A 		12.3
(3)
A 		4.6
(-3)
A 		8.1
(-0.3)
A 		9.5
(0.8)
A 		8
C 13.5
(2.9)
A 		11.5
(1.7)
P 		7
(-1)
A 		5.1
(-2.2)
A 		3.8
(-3)
A 		13.6
(3)
P 		10
avr 10.5
(1.7) 		11.5
(3) 		8.4
(-1) 		6.8
(-3) 		8.3
(-1.1) 		9.4
(0.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175350_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20688
Sequence Type Exemplar sequence
Representative Public ID AV178202 NCBI
Target Description AV178202_rc /REP_DB=TREMBL Accession /GB=AV178202 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk561g1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062833(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062833 NCBI Caenorhabditis elegans F40H3.6 (F40H3.6) mRNA, complete cds. 11/11 None
F40H3.6 ENSEMBL cdna:known chromosome:CEL140:II:6186963:6187308:-1 gene:F40H3.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001571 8/11 Cross Hyb Matching Probes None
SNAP00000001734 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6186973-6187295(-) 88.57 100.0
Public Domain and Genome References
Gene Title
Ensembl F40H3.6
Entrez Gene 174025 Entrez gene
SwissProt Q965I3 EMBL-EBI
WormBase CE28318 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK70643 Hypothetical protein F40H3.6 [Caenorhabditis elegans] ref|NP_495234.1| F40H3.6 [Caenorhabditis elegans] 9.0E-11
Sequence
Target Sequence 
>C. ELEGANS:175350_AT
aacggtacagaacatcacttgaagtggctggatggatggacaagacaacgacgacgacga
cacaacgattgggtggattggatggatggatggatcgggacgatcaggatggaaagataa
tatagtttgaagttaaattgatgtcaagatcgaatacttggatggatcaggatggatgga
cgacgacgatcgggatggcacgtggtgtggtggtggcgtggtgggatggaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGGTACAGAACATCACTTGAAGT 206 141 18 Antisense
GGCTGGATGGATGGACAAGACAACG 59 541 43 Antisense
ATGGATGGACAAGACAACGACGACG 246 51 49 Antisense
GACGACACAACGATTGGGTGGATTG 608 377 73 Antisense
GATGGATCGGGACGATCAGGATGGA 422 407 106 Antisense
AAATTGATGTCAAGATCGAATACTT 650 113 152 Antisense
ATCGAATACTTGGATGGATCAGGAT 405 37 166 Antisense
GGATCAGGATGGATGGACGACGACG 320 511 181 Antisense
CGACGATCGGGATGGCACGTGGTGT 39 251 201 Antisense
ATGGCACGTGGTGTGGTGGTGGCGT 258 53 212 Antisense
GTGGTGGCGTGGTGGGATGGAAGAA 174 489 227 Antisense
Sequence Source Affymetrix Proprietary Database