[Home] | [Total List]

[175349_at]

Description AU116634_rc /REP_DB=TREMBL Accession /GB=AU116634 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk747a7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 74      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 73      6grp_total > 65      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 313
1 2 3 4 range
A 352.2
(-1.9)
P 		366.7
(-1.6)
P 		300
(-3)
P 		578.1
(3)
P 		278
B 355.1
(-3)
P 		366
(-2.7)
P 		384.1
(-2.3)
P 		613.4
(3)
P 		258
C 419.6
(-1.2)
P 		337.2
(-3)
P 		379.2
(-2.1)
P 		605.8
(3)
P 		269
avr 375.6
(-2.5) 		356.6
(-2.9) 		354.4
(-3) 		599.1
(3) 		245

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 493
1 2 3 4 5 6 range
A 281.7
(-3)
P 		318.7
(-2.5)
P 		775
(3)
P 		481
(-0.6)
P 		411.4
(-1.4)
P 		476.5
(-0.6)
P 		493
B 388.1
(-3)
P 		468.1
(-1.6)
P 		706.2
(2.5)
P 		561.4
(-0)
P 		554
(-0.1)
P 		736.3
(3)
P 		348
C 310.8
(-3)
P 		490.1
(-0.6)
P 		429
(-1.4)
P 		568.9
(0.4)
P 		415.4
(-1.6)
P 		766.6
(3)
P 		456
avr 326.9
(-3) 		425.6
(-1.2) 		636.7
(2.6) 		537.1
(0.8) 		460.3
(-0.6) 		659.8
(3) 		333
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 128.2
(3)
P 		79.6
(-2.9)
P 		78.4
(-3)
P 		84.6
(-2.3)
P 		50
B 113.2
(0.5)
P 		90.4
(-2.8)
P 		89
(-3)
P 		130.7
(3)
P 		42
C 138.9
(3)
P 		96.9
(-3)
P 		132.2
(2)
P 		102.1
(-2.3)
P 		42
avr 126.8
(3) 		89
(-3) 		99.9
(-1.3) 		105.8
(-0.3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 51.9
(-3)
P 		113.3
(0.2)
P 		168.8
(3)
P 		122
(0.6)
P 		124.1
(0.7)
P 		116
(0.3)
P 		117
B 135
(-3)
P 		155.8
(-2.1)
P 		171.5
(-1.4)
P 		148.7
(-2.4)
P 		225.1
(0.9)
P 		274.5
(3)
P 		140
C 115.2
(-2.8)
P 		149.6
(-1.4)
P 		109.2
(-3)
P 		114.4
(-2.8)
P 		134.4
(-2)
P 		256.6
(3)
P 		147
avr 100.7
(-3) 		139.6
(-1) 		149.8
(-0.4) 		128.4
(-1.6) 		161.2
(0.2) 		215.7
(3) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175349_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20914
Sequence Type Exemplar sequence
Representative Public ID AU116634 NCBI
Target Description AU116634_rc /REP_DB=TREMBL Accession /GB=AU116634 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk747a7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065641(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065641 NCBI Caenorhabditis elegans C26E6.12 (C26E6.12) mRNA, complete cds. 11/11 None
SNAP00000014698 ENSEMBL cdna:SNAP chromosome:CEL140:III:4930654:4932120:-1 11/11 None
GENEFINDER00000014713 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4930654:4932120:-1 11/11 None
C26E6.12 ENSEMBL cdna:known chromosome:CEL140:III:4930627:4932150:-1 gene:C26E6.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4930636-4930964(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C26E6.12
Entrez Gene 175664 Entrez gene
SwissProt Q95QU5 EMBL-EBI
WormBase CE27734 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1624775_AT dm
DROSGENOME1:146510_AT dm
CHICKEN:GGA.10019.2.S1_AT Claudin 12 gga
HG-U133_PLUS_2:234311_S_AT hypothetical protein BC004923 hs
HG-U133B:234311_S_AT hypothetical protein BC004923 hs
U133_X3P:HS.137506.1.S1_3P_A_AT hypothetical protein BC004923 hs
HG-U95E:75180_AT hypothetical protein BC004923 hs
HU35KSUBB:RC_AA214615_AT Hypothetical protein BC004923 hs
U133_X3P:HS.194348.0.S1_3P_AT Hypothetical protein BC004923 hs
U133_X3P:HS.102399.0.A1_3P_X_AT Hypothetical protein BC004923 hs
U133_X3P:HS.102399.0.A1_3P_AT Hypothetical protein BC004923 hs
HG-U133_PLUS_2:230684_AT Hypothetical protein BC004923 hs
HG-U133B:230684_AT Hypothetical protein BC004923 hs
HG-U133_PLUS_2:239773_AT Hypothetical protein BC004923 hs
HG-U133B:239773_AT Hypothetical protein BC004923 hs
HG-U95B:49896_AT Hypothetical protein BC004923 hs
HG-U95B:51486_AT Hypothetical protein BC004923 hs
HG-U133_PLUS_2:236633_AT Hypothetical protein BC004923 hs
HG-U133B:236633_AT Hypothetical protein BC004923 hs
HG-U95E:74665_AT Hypothetical protein BC004923 hs
HU35KSUBD:RC_AA280286_AT Hypothetical protein BC004923 hs
U133_X3P:HS.131729.0.A1_3P_AT Hypothetical protein BC004923 hs
MG-U74CV2:166332_R_AT cDNA sequence BC034507 mm
MG-U74CV2:165951_I_AT cDNA sequence BC034507 mm
MOE430B:1434030_AT cDNA sequence BC034507 mm
MOUSE430_2:1434030_AT cDNA sequence BC034507 mm
MOE430B:1436543_AT cDNA sequence BC034507 mm
MOUSE430_2:1436543_AT cDNA sequence BC034507 mm
MG-U74BV2:108344_AT cDNA sequence BC034507 mm
RG-U34C:RC_AI175001_AT claudin 12 (predicted) rn
RAE230B:1377624_AT claudin 12 (predicted) rn
RAT230_2:1377624_AT claudin 12 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK67213 Hypothetical protein C26E6.12 [Caenorhabditis elegans] ref|NP_498042.1| C26E6.12 [Caenorhabditis elegans] 0.0
blast H88444 protein C26E6.12 [imported] - Caenorhabditis elegans 1.0E-165
blast CAE71303 Hypothetical protein CBG18192 [Caenorhabditis briggsae] 3.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR006169 EMBL-EBI GTP1/OBG sub-domain 6.0E-20
Sequence
Target Sequence 
>C. ELEGANS:175349_AT
aaaaccaatatctcatctcttgctaaatctcttcaatctcaaaaatggatcgatatggtg
cctgaagagatgaggccgaagataccgatgagattcgaacacgttgtgcaactcagtgct
agaagtggaaaaatcgacgaatttacgaatgttctgaagttaatgaggcaccatcttcat
gctttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACCAATATCTCATCTCTTGCTA 580 131 33 Antisense
ATATCTCATCTCTTGCTAAATCTCT 225 21 40 Antisense
TCTTGCTAAATCTCTTCAATCTCAA 158 619 50 Antisense
AAATGGATCGATATGGTGCCTGAAG 607 119 75 Antisense
GGTGCCTGAAGAGATGAGGCCGAAG 52 501 89 Antisense
GAGGCCGAAGATACCGATGAGATTC 678 405 104 Antisense
GATGAGATTCGAACACGTTGTGCAA 395 411 119 Antisense
GAACACGTTGTGCAACTCAGTGCTA 320 351 129 Antisense
GTGCAACTCAGTGCTAGAAGTGGAA 429 481 138 Antisense
ATGTTCTGAAGTTAATGAGGCACCA 132 47 181 Antisense
TGAGGCACCATCTTCATGCTTTGAA 8 567 196 Antisense
Sequence Source Affymetrix Proprietary Database