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[175348_at]

Description AV182621_rc /REP_DB=TREMBL Accession /GB=AV182621 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk640d8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 69      4grp_highest_8_8 > 31      4grp_high_8_8 > 12      6grp_highest_nonorm > 82      6grp_total > 49      4grp_total > 11      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 273
1 2 3 4 range
A 275.8
(1.3)
P 		244.4
(0.4)
P 		127.7
(-3)
P 		334.9
(3)
P 		207
B 137.5
(-3)
P 		161.2
(-2.5)
P 		160.1
(-2.5)
P 		400.4
(3)
P 		263
C 273.1
(-1.5)
P 		261.3
(-2.1)
P 		240.6
(-3)
P 		371.5
(3)
P 		131
avr 228.8
(-1.4) 		222.3
(-1.6) 		176.1
(-3) 		368.9
(3) 		193

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 389
1 2 3 4 5 6 range
A 442.4
(0.9)
P 		283.9
(-2.7)
P 		309.5
(-2.2)
P 		272.8
(-3)
P 		534
(3)
P 		502.1
(2.3)
P 		261
B 410.7
(0.6)
P 		412.9
(0.6)
P 		210.6
(-3)
P 		364.2
(-0.2)
P 		456.5
(1.4)
P 		543.5
(3)
P 		333
C 346.2
(1.8)
P 		288.3
(0.3)
P 		154.8
(-3)
P 		277.6
(0.1)
P 		338.6
(1.6)
P 		395
(3)
P 		240
avr 399.8
(1.1) 		328.4
(-0.6) 		225
(-3) 		304.9
(-1.1) 		443
(2.1) 		480.2
(3) 		255
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 100.4
(3)
P 		53
(-1.2)
P 		33.4
(-3)
P 		49
(-1.6)
P 		67
B 43.8
(-2.2)
P 		39.8
(-2.7)
P 		37.1
(-3)
P 		85.3
(3)
P 		48
C 90.4
(3)
P 		75.1
(-0.3)
P 		83.8
(1.6)
P 		62.6
(-3)
P 		28
avr 78.2
(3) 		56
(-2) 		51.4
(-3) 		65.6
(0.2) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 81.6
(-2.1)
P 		101
(-0.8)
P 		67.4
(-3)
P 		69.2
(-2.9)
P 		161.1
(3)
P 		122.2
(0.5)
P 		94
B 142.9
(0.6)
P 		137.4
(0.4)
P 		51.1
(-3)
P 		96.5
(-1.2)
P 		185.5
(2.3)
P 		202.7
(3)
P 		152
C 128.3
(2.7)
P 		88
(0.1)
P 		39.4
(-3)
P 		55.8
(-1.9)
P 		109.6
(1.5)
P 		132.2
(3)
P 		93
avr 117.6
(0.9) 		108.8
(0.4) 		52.6
(-3) 		73.8
(-1.7) 		152.1
(3) 		152.4
(3) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175348_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22006
Sequence Type Exemplar sequence
Representative Public ID AV182621 NCBI
Target Description AV182621_rc /REP_DB=TREMBL Accession /GB=AV182621 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk640d8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071842(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071842 NCBI Caenorhabditis elegans Y61A9LA.1 (Y61A9LA.1) mRNA, complete cds. 11/11 None
Y61A9LA.1 ENSEMBL cdna:known chromosome:CEL140:V:4592652:4601828:1 gene:Y61A9LA.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4601468-4601748(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y61A9LA.1
Entrez Gene 178849 Entrez gene
SwissProt Q9N309 EMBL-EBI
WormBase CE29895 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4182 carboxypeptidase A activity inferred from electronic annotation QuickGO AmiGO
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60845 Hypothetical protein Y61A9LA.1 [Caenorhabditis elegans] ref|NP_504243.2| Y61A9LA.1 [Caenorhabditis elegans] 0.0
blast CAE64152 Hypothetical protein CBG08770 [Caenorhabditis briggsae] 0.0
blast CAG11830 unnamed protein product [Tetraodon nigroviridis] 2.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 1.2E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504243.2 12 35-57,90-112,124-146,151-173,186-208,212-234,314-336,356-378,385-407,417-439,446-465,475-497
Y61A9LA.1 12 35-57,90-112,124-146,151-173,186-208,212-234,314-336,356-378,385-407,417-439,446-465,475-497
Sequence
Target Sequence 
>C. ELEGANS:175348_AT
agactaatttatgccagatcctcctgaatcctaacatgacacttttcgcatattgacact
tcttcaacattttcagaagaagactttcgctattttattgcaattttttgaattattgtt
taacactttttgattcgcgccaattttcctatttcatcaatttctacgagtcccccaccc
tcaacttgctcggttttcttctcttatgttctatacgatatccttgttttgttctatagt
cgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACTAATTTATGCCAGATCCTCCT 513 71 16 Antisense
AGATCCTCCTGAATCCTAACATGAC 424 67 31 Antisense
GAATCCTAACATGACACTTTTCGCA 190 331 41 Antisense
ACTTTTCGCATATTGACACTTCTTC 62 103 56 Antisense
GACACTTCTTCAACATTTTCAGAAG 202 367 70 Antisense
AGAAGAAGACTTTCGCTATTTTATT 570 73 90 Antisense
AACACTTTTTGATTCGCGCCAATTT 692 135 137 Antisense
TTTCCTATTTCATCAATTTCTACGA 3 671 160 Antisense
GGTTTTCTTCTCTTATGTTCTATAC 164 507 207 Antisense
TGTTCTATACGATATCCTTGTTTTG 29 563 222 Antisense
TCCTTGTTTTGTTCTATAGTCGATT 204 591 236 Antisense
Sequence Source Affymetrix Proprietary Database