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[175346_at]

Description AU115621_rc /REP_DB=TREMBL Accession /GB=AU115621 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk734g6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 18      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 40      6grp_total > 18      4grp_total > 31      6grp_cgc > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 752
1 2 3 4 range
A 1114.5
(3)
P 		362.5
(-3)
P 		514.5
(-1.8)
P 		649.4
(-0.7)
P 		752
B 917.8
(3)
P 		611
(-1.9)
P 		540.6
(-3)
P 		758.6
(0.5)
P 		377
C 920.5
(3)
P 		851.4
(-0.3)
P 		793.4
(-3)
P 		917.9
(2.9)
P 		127
avr 984.3
(3) 		608.3
(-3) 		616.2
(-2.9) 		775.3
(-0.3) 		376

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1160
1 2 3 4 5 6 range
A 1004.2
(3)
P 		721.4
(0.2)
P 		497.6
(-2)
P 		416.4
(-2.8)
P 		840.7
(1.4)
P 		396.1
(-3)
P 		608
B 1555.6
(3)
P 		611.6
(-2.4)
P 		505.7
(-3)
P 		777
(-1.4)
P 		764.1
(-1.5)
P 		591.2
(-2.5)
P 		1050
C 850.3
(3)
P 		851.8
(3)
P 		473.9
(-2.7)
P 		454.1
(-3)
P 		547.4
(-1.6)
P 		578.2
(-1.1)
P 		398
avr 1136.7
(3) 		728.3
(-0.8) 		492.4
(-3) 		549.2
(-2.5) 		717.4
(-0.9) 		521.8
(-2.7) 		644
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 327
1 2 3 4 range
A 405.8
(3)
P 		78.7
(-3)
P 		134.5
(-2)
P 		95.1
(-2.7)
P 		327
B 292.7
(3)
P 		150.9
(-2.1)
P 		125.3
(-3)
P 		161.6
(-1.7)
P 		167
C 304.7
(3)
P 		244.8
(0.6)
P 		276.5
(1.9)
P 		154.8
(-3)
P 		150
avr 334.4
(3) 		158.1
(-2.4) 		178.8
(-1.7) 		137.2
(-3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 450
1 2 3 4 5 6 range
A 185.1
(0.3)
P 		256.6
(3)
P 		108.4
(-2.6)
P 		105.6
(-2.7)
P 		253.7
(2.9)
P 		96.4
(-3)
P 		160
B 541.3
(3)
P 		203.6
(-1.8)
P 		122.8
(-3)
P 		205.8
(-1.8)
P 		310.4
(-0.3)
P 		220.4
(-1.6)
P 		419
C 315.2
(3)
P 		259.9
(1.5)
P 		120.6
(-2.2)
P 		91.3
(-3)
P 		177.1
(-0.7)
P 		193.6
(-0.3)
P 		224
avr 347.2
(3) 		240
(0.2) 		117.3
(-3) 		134.2
(-2.6) 		247.1
(0.4) 		170.1
(-1.6) 		230
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175346_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22283
Sequence Type Exemplar sequence
Representative Public ID AU115621 NCBI
Target Description AU115621_rc /REP_DB=TREMBL Accession /GB=AU115621 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk734g6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171799(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171799 NCBI Caenorhabditis elegans E02H4.3a (E02H4.3) mRNA, complete cds. 11/11 None
E02H4.3a ENSEMBL cdna:known chromosome:CEL140:X:14284755:14291229:-1 gene:E02H4.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
3565068 2 1 NM_171799 175346_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14284764-14285106(-) 100.0 100.0
Public Domain and Genome References
Ensembl E02H4.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94122 Hypothetical protein E02H4.3a [Caenorhabditis elegans] emb|CAA91979.2| Hypothetical protein E02H4.3a [Caenorhabditis elegans] ref|NP_741928.1| E02H4.3a [Caenorhabditis elegans] 0.0
blast CAE63011 Hypothetical protein CBG07253 [Caenorhabditis briggsae] 0.0
blast CAD44096 Hypothetical protein E02H4.3b [Caenorhabditis elegans] emb|CAD44105.1| Hypothetical protein E02H4.3b [Caenorhabditis elegans] ref|NP_741927.1| E02H4.3b [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 8.0E-54
hanks 3.1.5 CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; Cdk6 2.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 5.8E-59
Sequence
Target Sequence 
>C. ELEGANS:175346_AT
tttccccattaaggatatcatgtgaggttctttgcccagttttatcattgattgtttttt
tttgtaaactttaatttctcattgcaacaatatgagaagtaaggtaggagtattgataat
taataagtattatcaaaagtagatcattgatttgagttttctcaaaagtctgagctcatt
catgtttcaattctcttttcaatatgtgttctgttttaccgattgtattact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCCCATTAAGGATATCATGTGA 500 669 92 Antisense
AGGATATCATGTGAGGTTCTTTGCC 372 57 103 Antisense
TTCTTTGCCCAGTTTTATCATTGAT 430 691 119 Antisense
GTAAACTTTAATTTCTCATTGCAAC 523 461 155 Antisense
GTAGATCATTGATTTGAGTTTTCTC 381 457 230 Antisense
AGTTTTCTCAAAAGTCTGAGCTCAT 443 63 246 Antisense
AAGTCTGAGCTCATTCATGTTTCAA 549 157 257 Antisense
GCTCATTCATGTTTCAATTCTCTTT 416 301 265 Antisense
AATTCTCTTTTCAATATGTGTTCTG 483 177 280 Antisense
ATATGTGTTCTGTTTTACCGATTGT 668 21 293 Antisense
GTTCTGTTTTACCGATTGTATTACT 631 441 299 Antisense
Sequence Source Affymetrix Proprietary Database