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[175344_at]

Description AV183872_rc /REP_DB=TREMBL Accession /GB=AV183872 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk657c2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 07      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 77      6grp_total > 08      4grp_total > 22      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2904
1 2 3 4 range
A 2748.5
(3)
P 		1453.6
(-1.4)
P 		987.3
(-3)
P 		2671.1
(2.7)
P 		1761
B 2963.1
(1.6)
P 		1039.4
(-2.6)
P 		852
(-3)
P 		3608.3
(3)
P 		2756
C 2641.5
(2.2)
P 		967.4
(-2.3)
P 		704.7
(-3)
P 		2960.2
(3)
P 		2256
avr 2784.4
(2.2) 		1153.5
(-2.2) 		848
(-3) 		3079.9
(3) 		2232

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1246
1 2 3 4 5 6 range
A 1583.4
(0.9)
P 		1624.2
(1.2)
P 		1137.5
(-2.5)
P 		1514.8
(0.4)
P 		1065.5
(-3)
P 		1867.9
(3)
P 		802
B 1351.2
(0.9)
P 		1109.2
(-1.4)
P 		1375.1
(1.1)
P 		1578.5
(3)
P 		932.6
(-3)
P 		1435.9
(1.7)
P 		646
C 1855.1
(3)
P 		1192.8
(-0.2)
P 		894.1
(-1.7)
P 		1260.9
(0.1)
P 		1105.6
(-0.6)
P 		621.5
(-3)
P 		1234
avr 1596.6
(3) 		1308.7
(-0.1) 		1135.6
(-1.9) 		1451.4
(1.4) 		1034.6
(-3) 		1308.4
(-0.1) 		562
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 803
1 2 3 4 range
A 1000.7
(3)
P 		315.5
(-2.5)
P 		258.1
(-3)
P 		391
(-1.9)
P 		743
B 944.9
(3)
P 		256.7
(-2.5)
P 		197.4
(-3)
P 		768.9
(1.6)
P 		748
C 874.4
(3)
P 		278.1
(-2.7)
P 		245.6
(-3)
P 		499.1
(-0.6)
P 		629
avr 940
(3) 		283.4
(-2.6) 		233.7
(-3) 		553
(-0.3) 		706

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 480
1 2 3 4 5 6 range
A 291.9
(-2.2)
P 		577.6
(3)
P 		247.7
(-3)
P 		384.2
(-0.5)
P 		321.5
(-1.7)
P 		454.8
(0.8)
P 		330
B 470.2
(1.1)
P 		369.2
(-1.9)
P 		333.9
(-3)
P 		418.1
(-0.5)
P 		378.9
(-1.7)
P 		535.4
(3)
P 		202
C 687.6
(3)
P 		364
(-1)
P 		227.6
(-2.8)
P 		253.6
(-2.4)
P 		357.8
(-1.1)
P 		208
(-3)
P 		480
avr 483.2
(3) 		436.9
(1.7) 		269.7
(-3) 		352
(-0.7) 		352.7
(-0.7) 		399.4
(0.6) 		214
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175344_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21902
Sequence Type Exemplar sequence
Representative Public ID AV183872 NCBI
Target Description AV183872_rc /REP_DB=TREMBL Accession /GB=AV183872 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk657c2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073979
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073979 NCBI Caenorhabditis elegans H37A05.1 (H37A05.1) mRNA, complete cds. A 
SNAP00000004887 ENSEMBL cdna:SNAP chromosome:CEL140:V:13653404:13656593:-1 None
GENEFINDER00000004890 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13653201:13656593:-1 None
H37A05.1 ENSEMBL cdna:known chromosome:CEL140:V:13652897:13656721:-1 gene:H37A05.1 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13653261-13653481(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H37A05.1
Entrez Gene 179853 Entrez gene
SwissProt Q9XXT5 EMBL-EBI
WormBase CE19946 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249168_AT lipin family protein at
CANINE_2:CFAAFFX.28215.1.S1_S_AT similar to Lipin-2 cfa
CHICKEN:GGAAFFX.12825.1.S1_S_AT lipin 2 gga
CHICKEN:GGAAFFX.9429.1.S1_S_AT lipin 2 gga
CHICKEN:GGAAFFX.9429.4.S1_AT lipin 2 gga
HG-U133A:202459_S_AT lipin 2 hs
HG-U133A_2:202459_S_AT lipin 2 hs
HG-U133_PLUS_2:202459_S_AT lipin 2 hs
HG-U133A:202460_S_AT lipin 2 hs
HG-U133_PLUS_2:202460_S_AT lipin 2 hs
HG-U133A_2:202460_S_AT lipin 2 hs
HU35KSUBB:RC_T95515_S_AT lipin 2 hs
HU35KSUBC:RC_R01450_AT lipin 2 hs
HUGENEFL:D87436_AT lipin 2 hs
U133_X3P:G7662021_3P_A_AT lipin 2 hs
U133_X3P:HS.166318.0.A1_3P_A_AT lipin 2 hs
HG-U95AV2:40447_AT lipin 2 hs
HG-U95B:48132_AT lipin 2 hs
HG-U133_PLUS_2:244799_S_AT Lipin 2 hs
HG-U133B:244799_S_AT Lipin 2 hs
HG-U95C:56874_AT Lipin 2 hs
HG-U95C:58228_AT Lipin 2 hs
HG-U95E:73373_AT Lipin 2 hs
HU35KSUBB:RC_T70318_AT Lipin 2 hs
U133_X3P:HS.246780.0.A1_3P_AT Lipin 2 hs
MU11KSUBA:AA270915_S_AT lipin 2 mm
MG-U74AV2:96806_AT lipin 2 mm
MG-U74BV2:110009_AT lipin 2 mm
MG-U74AV2:161165_F_AT lipin 2 mm
MOE430A:1452836_AT lipin 2 mm
MOUSE430A_2:1452836_AT lipin 2 mm
MOUSE430_2:1452836_AT lipin 2 mm
MOE430A:1460290_AT lipin 2 mm
MOUSE430A_2:1460290_AT lipin 2 mm
MOUSE430_2:1460290_AT lipin 2 mm
MOE430A:1452837_AT lipin 2 mm
MOUSE430A_2:1452837_AT lipin 2 mm
MOUSE430_2:1452837_AT lipin 2 mm
MOE430B:1446316_AT Lipin 2, mRNA (cDNA clone MGC:46819 IMAGE:5101211) mm
MOUSE430_2:1446316_AT Lipin 2, mRNA (cDNA clone MGC:46819 IMAGE:5101211) mm
MU19KSUBB:TC34003_S_AT Lipin 2, mRNA (cDNA clone MGC:46819 IMAGE:5101211) mm
RAE230B:1396398_AT lipin 2 (predicted) rn
RAT230_2:1396398_AT lipin 2 (predicted) rn
RAE230B:1391378_AT Lipin 2 (predicted) rn
RAT230_2:1391378_AT Lipin 2 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA16154 Hypothetical protein H37A05.1 [Caenorhabditis elegans] ref|NP_506380.1| H37A05.1 [Caenorhabditis elegans] 0.0
blast CAE66268 Hypothetical protein CBG11512 [Caenorhabditis briggsae] 0.0
blast CAE66269 Hypothetical protein CBG11513 [Caenorhabditis briggsae] 1.0E-116
blast CAE66269 Hypothetical protein CBG11513 [Caenorhabditis briggsae] 1.0E-115
Protein Domains
Database ID Description E-Value
Pfam IPR007651 EMBL-EBI Lipin, N-terminal conserved region 8.9E-72
Sequence
Target Sequence 
>C. ELEGANS:175344_AT
gtagaagatccctttttgatgccagcaacaatcacattcccttactgtattccacaaaaa
tcatttttggagatctctatgatgacccccactaaaattataatatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGAAGATCCCTTTTTGATGCCAG 2 457 87 Antisense
ATCCCTTTTTGATGCCAGCAACAAT 474 37 94 Antisense
TTGATGCCAGCAACAATCACATTCC 668 705 102 Antisense
AATCACATTCCCTTACTGTATTCCA 213 171 116 Antisense
CATTCCCTTACTGTATTCCACAAAA 523 215 121 Antisense
TACTGTATTCCACAAAAATCATTTT 606 643 129 Antisense
AAAATCATTTTTGGAGATCTCTATG 561 133 143 Antisense
TGGAGATCTCTATGATGACCCCCAC 407 549 154 Antisense
TCTCTATGATGACCCCCACTAAAAT 447 611 160 Antisense
ATGATGACCCCCACTAAAATTATAA 123 45 165 Antisense
GACCCCCACTAAAATTATAATATCT 98 379 170 Antisense
Sequence Source Affymetrix Proprietary Database