[Home] | [Total List]

[175343_at]

Description AV181144_rc /REP_DB=TREMBL Accession /GB=AV181144 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk616f3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 79      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 93      6grp_total > 69      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 463
1 2 3 4 range
A 312.9
(-1.1)
P 		169.3
(-3)
P 		210.9
(-2.4)
P 		617.6
(3)
P 		448
B 300.4
(-1.1)
P 		203.7
(-3)
P 		293.6
(-1.2)
P 		506.8
(3)
P 		303
C 349.9
(-1.1)
P 		290.4
(-2)
P 		220.5
(-3)
P 		632.6
(3)
P 		412
avr 321.1
(-1.4) 		221.1
(-3) 		241.7
(-2.7) 		585.7
(3) 		365

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 446
1 2 3 4 5 6 range
A 427.9
(-0.5)
P 		296
(-2.7)
P 		297.8
(-2.7)
P 		280.8
(-3)
P 		403.3
(-0.9)
P 		629.7
(3)
P 		349
B 428.8
(0.7)
P 		277.7
(-2.4)
P 		250
(-3)
P 		258.4
(-2.8)
P 		400.1
(0.1)
P 		537.5
(3)
P 		288
C 369.4
(-0.4)
P 		230.7
(-2.3)
P 		183.3
(-3)
P 		290.1
(-1.5)
P 		522.7
(1.7)
P 		616.2
(3)
P 		433
avr 408.7
(-0.2) 		268.1
(-2.6) 		243.7
(-3) 		276.4
(-2.4) 		442
(0.4) 		594.5
(3) 		351
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 113.9
(3)
P 		36.8
(-3)
P 		55.1
(-1.6)
P 		90.4
(1.2)
P 		77
B 95.8
(1.7)
P 		50.3
(-3)
P 		68
(-1.2)
P 		108
(3)
P 		58
C 115.8
(3)
P 		83.5
(-2)
P 		76.8
(-3)
P 		106.7
(1.6)
P 		39
avr 108.5
(3) 		56.9
(-3) 		66.6
(-1.9) 		101.7
(2.2) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 78.9
(-2)
P 		105.3
(-0.3)
P 		64.9
(-3)
P 		71.2
(-2.6)
P 		121.7
(0.9)
P 		153.3
(3)
P 		88
B 149.2
(0.8)
P 		92.4
(-1.6)
P 		60.7
(-3)
P 		68.4
(-2.7)
P 		162.6
(1.4)
P 		200.4
(3)
P 		140
C 136.9
(0.4)
P 		70.4
(-2.1)
P 		46.7
(-3)
P 		58.3
(-2.6)
P 		169.2
(1.6)
P 		206.3
(3)
P 		160
avr 121.7
(-0) 		89.4
(-1.5) 		57.4
(-3) 		66
(-2.6) 		151.2
(1.4) 		186.7
(3) 		129
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175343_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21596
Sequence Type Exemplar sequence
Representative Public ID AV181144 NCBI
Target Description AV181144_rc /REP_DB=TREMBL Accession /GB=AV181144 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk616f3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028190(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028190 NCBI Caenorhabditis elegans T07A9.13a (T07A9.13) mRNA, complete cds. 11/11 None
T07A9.13a ENSEMBL cdna:known chromosome:CEL140:IV:388074:388707:1 gene:T07A9.13 11/11 None
T07A9.13b ENSEMBL cdna:known chromosome:CEL140:IV:388084:388733:1 gene:T07A9.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028191 5/11 Cross Hyb Matching Probes None
SNAP00000017756 5/11 Cross Hyb Matching Probes None
GENEFINDER00000017773 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176861 2 1 NM_001028190 175343_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:388315-388643(+) 100.0 100.0
Public Domain and Genome References
Ensembl T07A9.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39286 Hypothetical protein T07A9.13a [Caenorhabditis elegans] ref|NP_001023361.1| T07A9.13a [Caenorhabditis elegans] 3.0E-50
blast AAV58861 Hypothetical protein T07A9.13b [Caenorhabditis elegans] ref|NP_001023362.1| T07A9.13b [Caenorhabditis elegans] 5.0E-47
blast AAK39286 Hypothetical protein T07A9.13a [Caenorhabditis elegans] ref|NP_001023361.1| T07A9.13a [Caenorhabditis elegans] 5.0E-47
Sequence
Target Sequence 
>C. ELEGANS:175343_AT
gaacgagagagctgagcgccaagatagaggtctcaaagaggcggagacgacgtatgcaaa
actagtcgaatcgcaaaagacgttggtggactttgtgcgcaaagagtatcaggatacgaa
acatcagaaatattgaactctgaacaactgtctcccaaaaatgcctgtaaatatatcaat
tatcgacataacttcacttaacttctacaaatacggtctcattttttgtatttcacttta
cttccgatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGAGAGAGCTGAGCGCCAAGAT 307 347 13 Antisense
GAGCGCCAAGATAGAGGTCTCAAAG 373 385 26 Antisense
CAAAGAGGCGGAGACGACGTATGCA 513 189 46 Antisense
ACGTATGCAAAACTAGTCGAATCGC 584 93 62 Antisense
GACGTTGGTGGACTTTGTGCGCAAA 370 377 91 Antisense
TGAACTCTGAACAACTGTCTCCCAA 678 573 146 Antisense
AACTGTCTCCCAAAAATGCCTGTAA 161 141 158 Antisense
ATCGACATAACTTCACTTAACTTCT 44 37 194 Antisense
TTAACTTCTACAAATACGGTCTCAT 30 683 210 Antisense
TACGGTCTCATTTTTTGTATTTCAC 703 647 224 Antisense
TTGTATTTCACTTTACTTCCGATCT 258 705 238 Antisense
Sequence Source Affymetrix Proprietary Database