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[175342_at]

Description AV183616_rc /REP_DB=TREMBL Accession /GB=AV183616 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk653h8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 06      4grp_highest_8_8 > 41      4grp_high_8_8 > 50      6grp_highest_nonorm > 50      6grp_total > 06      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 606
1 2 3 4 range
A 464.5
(3)
P 		440.8
(2.2)
P 		421.5
(1.5)
P 		291
(-3)
P 		174
B 863.3
(3)
P 		543.6
(-0.3)
P 		587.2
(0.2)
P 		278.7
(-3)
P 		585
C 655
(3)
P 		620.4
(2.5)
P 		532.9
(1.2)
P 		257.4
(-3)
P 		398
avr 660.9
(3) 		534.9
(1) 		513.9
(0.7) 		275.7
(-3) 		385

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 616
1 2 3 4 5 6 range
A 759.7
(3)
P 		600.4
(1.1)
P 		673
(2)
P 		471.4
(-0.4)
P 		533.8
(0.3)
P 		250.9
(-3)
P 		509
B 866.4
(3)
P 		446.2
(-1.7)
P 		325.7
(-3)
P 		482.2
(-1.3)
P 		519.6
(-0.8)
P 		332.7
(-2.9)
P 		541
C 786
(3)
P 		500.2
(-1)
P 		607.3
(0.5)
P 		391.9
(-2.6)
P 		444.6
(-1.8)
P 		361
(-3)
P 		425
avr 804
(3) 		515.6
(-0.5) 		535.3
(-0.3) 		448.5
(-1.4) 		499.3
(-0.7) 		314.9
(-3) 		489
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 233
1 2 3 4 range
A 169.1
(3)
P 		95.7
(-0.5)
P 		110.2
(0.2)
P 		42.6
(-3)
P 		127
B 275.3
(3)
P 		134.3
(-0.9)
P 		136.1
(-0.9)
P 		59.4
(-3)
P 		216
C 216.8
(3)
P 		178.4
(1.7)
P 		185.7
(1.9)
P 		43.4
(-3)
P 		173
avr 220.4
(3) 		136.1
(0.1) 		144
(0.3) 		48.5
(-3) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 240
1 2 3 4 5 6 range
A 140
(0.1)
P 		213.5
(3)
P 		146.6
(0.4)
P 		119.6
(-0.7)
P 		161.1
(0.9)
P 		61.1
(-3)
P 		152
B 301.5
(3)
P 		148.5
(-1.1)
P 		79.1
(-3)
P 		127.7
(-1.7)
P 		211.1
(0.6)
P 		124.1
(-1.8)
P 		222
C 291.3
(3)
P 		152.6
(-0.9)
P 		154.6
(-0.9)
P 		78.8
(-3)
P 		143.9
(-1.2)
P 		120.8
(-1.8)
P 		213
avr 244.3
(3) 		171.5
(-0.1) 		126.8
(-2) 		108.7
(-2.7) 		172
(-0) 		102
(-3) 		142
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175342_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22184
Sequence Type Exemplar sequence
Representative Public ID AV183616 NCBI
Target Description AV183616_rc /REP_DB=TREMBL Accession /GB=AV183616 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk653h8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C35C5.4 ENSEMBL cdna:known chromosome:CEL140:X:11548529:11550561:1 gene:C35C5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11550265-11550551(+) 92.66 100.0
Public Domain and Genome References
Ensembl C35C5.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01691 Hypothetical protein C35C5.4 [Caenorhabditis elegans] ref|NP_509931.1| abnormal cell MIGration family member (mig-2) [Caenorhabditis elegans] gb|AAC47729.1| Rac-like GTPase [Caenorhabditis elegans] 1.0E-109
blast CAE70618 Hypothetical protein CBG17302 [Caenorhabditis briggsae] 1.0E-105
blast XP_624520 PREDICTED: similar to ENSANGP00000022835 [Apis mellifera] 2.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 8.9E-84
Sequence
Target Sequence 
>C. ELEGANS:175342_AT
gcatttacctcgttttgcagagcataccaaaaatgccaaatttctaaatttactactctc
ttttactcaaatgttctaattgcttatattctgagatcctccatctgtgaaattttacct
tttttccagtcagccgcttcaaattcttaacatttgtctggttttgttcgacaaacttaa
tcgttcttcatattgggttgtaggaaacgaaacattattattcccagacaatgtaatcac
tttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTTACCTCGTTTTGCAGAGCAT 250 309 23 Antisense
TAAATTTACTACTCTCTTTTACTCA 342 639 67 Antisense
TACTCTCTTTTACTCAAATGTTCTA 218 647 76 Antisense
AATGTTCTAATTGCTTATATTCTGA 19 165 92 Antisense
ATATTCTGAGATCCTCCATCTGTGA 491 19 108 Antisense
TTTTTTCCAGTCAGCCGCTTCAAAT 520 675 142 Antisense
TAACATTTGTCTGGTTTTGTTCGAC 405 639 170 Antisense
GTTCGACAAACTTAATCGTTCTTCA 585 437 188 Antisense
ATCGTTCTTCATATTGGGTTGTAGG 472 35 202 Antisense
AACGAAACATTATTATTCCCAGACA 20 139 228 Antisense
ATTCCCAGACAATGTAATCACTTTG 258 9 242 Antisense
Sequence Source Affymetrix Proprietary Database