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[175341_at]

Description AV178245_rc /REP_DB=TREMBL Accession /GB=AV178245 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk562d2 : 3prime end, single read.
Cluster 6grp_total > 70      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 5.1
(-3)
A 		6.4
(-2.8)
A 		9.9
(-2.3)
A 		44.6
(3)
A 		40
B 7.2
(-2.8)
A 		6.4
(-2.9)
A 		5.4
(-3)
A 		52.1
(3)
A 		47
C 3.8
(-3)
A 		3.6
(-3)
A 		10.5
(-2.7)
A 		153.7
(3)
A 		150
avr 5.4
(-3) 		5.5
(-3) 		8.6
(-2.8) 		83.5
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 10.1
(3)
A 		6.1
(-1.1)
A 		6.7
(-0.5)
A 		8
(0.9)
A 		6.9
(-0.3)
A 		4.2
(-3)
A 		6
B 5.4
(-2.7)
A 		7.1
(-2)
A 		4.6
(-3)
A 		19.8
(3)
A 		7.8
(-1.7)
A 		5.2
(-2.8)
A 		15
C 2.1
(-3)
A 		8.9
(-0.4)
A 		13.2
(1.3)
A 		17.5
(3)
A 		8.9
(-0.4)
A 		11
(0.5)
A 		15
avr 5.9
(-3) 		7.4
(-2) 		8.2
(-1.5) 		15.1
(3) 		7.9
(-1.7) 		6.8
(-2.4) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 1.8
(-2.5)
A 		1.4
(-3)
A 		2.6
(-1.6)
A 		6.5
(3)
A 		5
B 2.3
(-2.4)
A 		1.6
(-2.8)
A 		1.3
(-3)
A 		11.1
(3)
A 		10
C 1.3
(-2.9)
A 		1
(-3)
A 		3.6
(-2.4)
A 		25.9
(3)
A 		25
avr 1.8
(-2.8) 		1.3
(-3) 		2.5
(-2.5) 		14.5
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.9
(1.5)
A 		2.2
(3)
A 		1.5
(-0.5)
A 		2
(2)
A 		2.1
(2.5)
A 		1
(-3)
A 		1
B 1.9
(-1.9)
A 		2.4
(-1.1)
A 		1.1
(-3)
A 		5.3
(3)
A 		3.2
(0)
A 		1.9
(-1.9)
A 		4
C 0.8
(-3)
A 		2.7
(0.9)
A 		3.3
(2.2)
A 		3.5
(2.6)
A 		2.9
(1.3)
A 		3.7
(3)
A 		3
avr 1.5
(-3) 		2.4
(-0.4) 		2
(-1.6) 		3.6
(3) 		2.7
(0.4) 		2.2
(-1) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175341_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20068
Sequence Type Exemplar sequence
Representative Public ID AV178245 NCBI
Target Description AV178245_rc /REP_DB=TREMBL Accession /GB=AV178245 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk562d2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
W03F11.6d ENSEMBL cdna:known chromosome:CEL140:I:2160073:2203061:1 gene:W03F11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2202771-2203051(+) 100.0 100.0
Public Domain and Genome References
Ensembl W03F11.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO38589 Hypothetical protein W03F11.6d [Caenorhabditis elegans] ref|NP_001021661.1| W03F11.6d [Caenorhabditis elegans] 0.0
blast AAO38588 Hypothetical protein W03F11.6c [Caenorhabditis elegans] ref|NP_001021660.1| W03F11.6c [Caenorhabditis elegans] 0.0
blast AAK18989 Hypothetical protein W03F11.6a [Caenorhabditis elegans] ref|NP_490938.3| W03F11.6a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002710 EMBL-EBI Dilute (DIL) domain 5.1E-40
Pfam IPR000253 EMBL-EBI Forkhead-associated (FHA) 1.5E-12
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.2E-18
Pfam IPR000159 EMBL-EBI RA domain 5.7E-19
Pfam IPR000159 EMBL-EBI RA domain 4.8E-20
Sequence
Target Sequence 
>C. ELEGANS:175341_AT
tcgcgaattcccaaaaaatacgaatatccaaaaaaaaaccttttaaaaaagttgaagttg
tccactgggagcagggatggattcacccgttcacccgtttttgggcattttcacgggtga
cgggtgacccgctcacccgtggtctcggaaacgggtgaacgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCGAATTCCCAAAAAATACGAAT 51 599 73 Antisense
AAAGTTGAAGTTGTCCACTGGGAGC 78 121 120 Antisense
GAAGTTGTCCACTGGGAGCAGGGAT 514 337 126 Antisense
GGAGCAGGGATGGATTCACCCGTTC 508 519 140 Antisense
AGCAGGGATGGATTCACCCGTTCAC 544 77 142 Antisense
TCACCCGTTTTTGGGCATTTTCACG 630 625 163 Antisense
TTTTTGGGCATTTTCACGGGTGACG 365 673 170 Antisense
GGGCATTTTCACGGGTGACGGGTGA 169 383 175 Antisense
TCACGGGTGACGGGTGACCCGCTCA 609 625 183 Antisense
GCTCACCCGTGGTCTCGGAAACGGG 242 299 203 Antisense
TGGTCTCGGAAACGGGTGAACGACA 628 541 212 Antisense
Sequence Source Affymetrix Proprietary Database