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[175340_at]

Description AV185145_rc /REP_DB=TREMBL Accession /GB=AV185145 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk674b5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 07      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 20      6grp_total > 04      4grp_total > 47      6grp_highest_sub > De      6grp_cgc > 13      6grp_cgc_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 743
1 2 3 4 range
A 1639.3
(3)
P 		992.4
(-2.2)
P 		1014.8
(-2)
P 		896.6
(-3)
P 		743
B 1345.5
(3)
P 		995
(-1.7)
P 		896.4
(-3)
P 		1253
(1.8)
P 		449
C 1547.1
(3)
P 		1036
(-2)
P 		1002.8
(-2.3)
P 		934.1
(-3)
P 		613
avr 1510.6
(3) 		1007.8
(-2.6) 		971.3
(-3) 		1027.9
(-2.4) 		539

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 820
1 2 3 4 5 6 range
A 1277
(3)
P 		990.2
(-0.3)
P 		973.1
(-0.5)
P 		762.3
(-3)
P 		999.4
(-0.2)
P 		786.8
(-2.7)
P 		515
B 1448.2
(3)
P 		1167.5
(0)
P 		883.3
(-3)
P 		976.1
(-2)
P 		974.5
(-2)
P 		1016
(-1.6)
P 		565
C 1294.4
(3)
P 		1190.9
(2.1)
P 		816.9
(-1.3)
P 		1265.7
(2.7)
P 		920.2
(-0.4)
P 		628.1
(-3)
P 		666
avr 1339.9
(3) 		1116.2
(0.5) 		891.1
(-2.1) 		1001.4
(-0.8) 		964.7
(-1.3) 		810.3
(-3) 		530
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 466
1 2 3 4 range
A 596.9
(3)
P 		215.4
(-1.9)
P 		265.3
(-1.3)
P 		131.2
(-3)
P 		466
B 429.1
(3)
P 		245.8
(-2)
P 		207.7
(-3)
P 		267
(-1.4)
P 		221
C 512.1
(3)
P 		297.9
(-0.6)
P 		349.5
(0.2)
P 		157.5
(-3)
P 		355
avr 512.7
(3) 		253
(-1.8) 		274.2
(-1.4) 		185.2
(-3) 		328

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 235.4
(-1.4)
P 		352.2
(3)
P 		211.9
(-2.2)
P 		193.3
(-2.9)
P 		301.6
(1.1)
P 		191.6
(-3)
P 		161
B 503.9
(3)
P 		388.6
(0.6)
P 		214.5
(-3)
P 		258.5
(-2.1)
P 		395.9
(0.8)
P 		378.9
(0.4)
P 		289
C 479.8
(3)
P 		363.4
(0.4)
P 		207.9
(-3)
P 		254.5
(-2)
P 		297.8
(-1)
P 		210.3
(-2.9)
P 		272
avr 406.4
(3) 		368.1
(1.8) 		211.4
(-3) 		235.4
(-2.3) 		331.8
(0.7) 		260.3
(-1.5) 		195
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175340_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20780
Sequence Type Exemplar sequence
Representative Public ID AV185145 NCBI
Target Description AV185145_rc /REP_DB=TREMBL Accession /GB=AV185145 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk674b5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171850(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171850 NCBI Caenorhabditis elegans EGg Laying defective family member (egl-44) (egl-44) mRNA, complete cds. 11/11 None
F28B12.2a ENSEMBL cdna:known chromosome:CEL140:II:5933023:5940762:1 gene:F28B12.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174005 6 1 NM_171850 175340_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5940419-5940714(+) 100.0 100.0
Public Domain and Genome References
Ensembl F28B12.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31508 Egg laying defective protein 44, isoform a [Caenorhabditis elegans] ref|NP_741007.1| EGg Laying defective family member (egl-44) [Caenorhabditis elegans] sp|Q19849|EGL44_CAEEL Transcription enhancer factor-like protein egl-44 (Egg laying defective protein 44) 0.0
blast AAO38647 Egg laying defective protein 44, isoform c [Caenorhabditis elegans] ref|NP_495186.2| EGg Laying defective family member (egl-44) [Caenorhabditis elegans] 0.0
blast AAO38646 Egg laying defective protein 44, isoform b [Caenorhabditis elegans] ref|NP_741006.2| EGg Laying defective family member (egl-44) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000818 EMBL-EBI TEA/ATTS 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:175340_AT
ttttcgtctcatcatgtgcaaccagaagaaaactcgtcgagcttctcatatttcttggaa
attcacagaatccatcaaaaagtctacagtgtctagtacgagttgttctttaatttctaa
tccctcacattcatccccacacttctccctttcagattcagttccccccaatacttgcaa
cctcttctccacaccttccacaaaatctcaattctcgattttttcaacccaagtttccga
tttgattcagttctgttaggctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCGTCTCATCATGTGCAACCAG 281 675 14 Antisense
GTCTCATCATGTGCAACCAGAAGAA 3 471 19 Antisense
GCTTCTCATATTTCTTGGAAATTCA 521 305 54 Antisense
GAATCCATCAAAAAGTCTACAGTGT 488 329 81 Antisense
AAGTCTACAGTGTCTAGTACGAGTT 97 157 93 Antisense
GTGTCTAGTACGAGTTGTTCTTTAA 316 483 102 Antisense
TGTTCTTTAATTTCTAATCCCTCAC 277 561 117 Antisense
TTAATTTCTAATCCCTCACATTCAT 178 685 123 Antisense
CACACCTTCCACAAAATCTCAATTC 409 195 203 Antisense
CCTTCCACAAAATCTCAATTCTCGA 497 269 207 Antisense
GATTTGATTCAGTTCTGTTAGGCTC 576 427 252 Antisense
Sequence Source Affymetrix Proprietary Database