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[175339_at]

Description AV181329_rc /REP_DB=TREMBL Accession /GB=AV181329 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk618h7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 92      6grp_total > 78      4grp_total > 39      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 225.3
(3)
P 		80.8
(-3)
P 		112.7
(-1.7)
P 		124.8
(-1.2)
P 		145
B 251.9
(3)
P 		140.9
(-2.7)
P 		141.1
(-2.7)
P 		134.3
(-3)
P 		118
C 197.2
(3)
P 		123.6
(-3)
P 		140.4
(-1.6)
P 		180
(1.6)
P 		74
avr 224.8
(3) 		115.1
(-3) 		131.4
(-2.1) 		146.4
(-1.3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 397
1 2 3 4 5 6 range
A 163.3
(-2.6)
P 		153.9
(-2.8)
P 		142
(-3)
P 		171.4
(-2.5)
P 		316.6
(0.1)
P 		485.1
(3)
P 		343
B 226.2
(-1.9)
P 		239
(-1.7)
P 		155.5
(-3)
P 		160.8
(-2.9)
P 		281.4
(-1)
P 		538.5
(3)
P 		383
C 261.7
(-1)
P 		149.3
(-3)
P 		159.1
(-2.8)
P 		195.9
(-2.2)
P 		303.1
(-0.3)
P 		488
(3)
P 		339
avr 217.1
(-1.9) 		180.7
(-2.5) 		152.2
(-3) 		176
(-2.6) 		300.4
(-0.5) 		503.9
(3) 		352
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 82
(3)
P 		17.5
(-3)
P 		29.5
(-1.9)
P 		18.3
(-2.9)
P 		65
B 80.3
(3)
P 		34.8
(-2.3)
P 		32.7
(-2.5)
P 		28.6
(-3)
P 		52
C 65.3
(3)
P 		35.5
(-2.1)
P 		48.9
(0.2)
P 		30.3
(-3)
P 		35
avr 75.9
(3) 		29.3
(-2.6) 		37
(-1.6) 		25.7
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 30.1
(-3)
P 		54.7
(-1.3)
P 		30.9
(-2.9)
P 		43.5
(-2.1)
P 		95.5
(1.5)
P 		118.1
(3)
P 		88
B 78.7
(-1.5)
P 		79.6
(-1.5)
P 		37.7
(-3)
P 		42.6
(-2.8)
P 		114.3
(-0.2)
P 		200.8
(3)
P 		163
C 97
(-0.2)
P 		45.5
(-2.7)
P 		40.5
(-2.9)
P 		39.4
(-3)
P 		98.1
(-0.2)
P 		163.4
(3)
P 		124
avr 68.6
(-1.4) 		59.9
(-1.9) 		36.4
(-3) 		41.8
(-2.7) 		102.6
(0.2) 		160.8
(3) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175339_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20460
Sequence Type Exemplar sequence
Representative Public ID AV181329 NCBI
Target Description AV181329_rc /REP_DB=TREMBL Accession /GB=AV181329 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk618h7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058261(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058261 NCBI Caenorhabditis elegans Y74C9A.4b (Y74C9A.4) mRNA, complete cds. 11/11 None
Y74C9A.4b ENSEMBL cdna:known chromosome:CEL140:I:17519:26778:-1 gene:Y74C9A.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171592 2 1 NM_058261 175339_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:17559-17839(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y74C9A.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK67240 Hypothetical protein Y74C9A.4b [Caenorhabditis elegans] ref|NP_490662.1| Y74C9A.4b [Caenorhabditis elegans] 0.0
blast AAF36052 Hypothetical protein Y74C9A.4a [Caenorhabditis elegans] ref|NP_490663.1| Y74C9A.4a [Caenorhabditis elegans] 0.0
blast CAE66565 Hypothetical protein CBG11880 [Caenorhabditis briggsae] 5.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR000679 EMBL-EBI Zn-finger, GATA type 3.6E-6
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 2.5E-9
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 2.4E-6
Sequence
Target Sequence 
>C. ELEGANS:175339_AT
gcttaaaaagttcttctcggccacgtcgtcacaagctttgtattcacaaggatctcatcg
tattacattccacatatttttcccgccacgtggcataatactcatgttctcatttctata
tattgacttttgaacctttgtcgggcataatttgaaaatattgtttttagcccatttttt
gcatatttttttgtaccccatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTAAAAAGTTCTTCTCGGCCACG 416 1 32 Antisense
GTCGTCACAAGCTTTGTATTCACAA 460 473 56 Antisense
TATTCACAAGGATCTCATCGTATTA 553 661 72 Antisense
GATCTCATCGTATTACATTCCACAT 517 419 82 Antisense
TATTTTTCCCGCCACGTGGCATAAT 373 661 106 Antisense
GCCACGTGGCATAATACTCATGTTC 653 279 116 Antisense
ATACTCATGTTCTCATTTCTATATA 122 25 129 Antisense
TTGACTTTTGAACCTTTGTCGGGCA 451 655 154 Antisense
GAACCTTTGTCGGGCATAATTTGAA 148 347 163 Antisense
GTTTTTAGCCCATTTTTTGCATATT 487 449 194 Antisense
TTGCATATTTTTTTGTACCCCATCC 125 705 210 Antisense
Sequence Source Affymetrix Proprietary Database