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[175338_at]

Description AU115882_rc /REP_DB=TREMBL Accession /GB=AU115882 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk738a2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 67      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 97      6grp_total > 68      4grp_total > 05      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1238
1 2 3 4 range
A 885.4
(1.2)
P 		395.1
(-3)
P 		564.6
(-1.5)
P 		1091.5
(3)
P 		696
B 935.3
(-0.9)
P 		576.3
(-3)
P 		568.1
(-3)
P 		1633.4
(3)
P 		1065
C 862.7
(1)
P 		476.6
(-3)
P 		536.6
(-2.4)
P 		1059.9
(3)
P 		583
avr 894.5
(0.2) 		482.7
(-3) 		556.4
(-2.4) 		1261.6
(3) 		779

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1001
1 2 3 4 5 6 range
A 913.6
(-1.4)
P 		825
(-1.9)
P 		723.7
(-2.5)
P 		648.4
(-3)
P 		1086.7
(-0.4)
P 		1649.1
(3)
P 		1001
B 1082.7
(0.1)
P 		831.4
(-1.8)
P 		661.5
(-3)
P 		1031.1
(-0.3)
P 		846.5
(-1.7)
P 		1484.7
(3)
P 		823
C 763.7
(-2.5)
P 		841.8
(-2)
P 		776.1
(-2.5)
P 		925.2
(-1.5)
P 		695.7
(-3)
P 		1585.8
(3)
P 		890
avr 920
(-1.6) 		832.7
(-2.2) 		720.4
(-3) 		868.2
(-2) 		876.3
(-1.9) 		1573.2
(3) 		853
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 262
1 2 3 4 range
A 322.4
(3)
P 		85.8
(-3)
P 		147.6
(-1.4)
P 		159.8
(-1.1)
P 		237
B 298.3
(1.6)
P 		142.3
(-2.7)
P 		131.6
(-3)
P 		348.1
(3)
P 		217
C 285.6
(3)
P 		137
(-3)
P 		187
(-1)
P 		178.7
(-1.3)
P 		149
avr 302.1
(3) 		121.7
(-3) 		155.4
(-1.9) 		228.9
(0.6) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 396
1 2 3 4 5 6 range
A 168.4
(-2.7)
P 		293.4
(0.3)
P 		157.6
(-3)
P 		164.4
(-2.8)
P 		327.9
(1.2)
P 		401.5
(3)
P 		244
B 376.7
(0.3)
P 		276.8
(-1.2)
P 		160.6
(-3)
P 		273.1
(-1.3)
P 		343.9
(-0.2)
P 		553.6
(3)
P 		393
C 283.1
(-1.3)
P 		256.9
(-1.8)
P 		197.5
(-2.8)
P 		186.1
(-3)
P 		225.1
(-2.3)
P 		530.9
(3)
P 		345
avr 276.1
(-1.1) 		275.7
(-1.1) 		171.9
(-3) 		207.9
(-2.3) 		299
(-0.6) 		495.3
(3) 		323
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175338_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20136
Sequence Type Exemplar sequence
Representative Public ID AU115882 NCBI
Target Description AU115882_rc /REP_DB=TREMBL Accession /GB=AU115882 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk738a2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060118(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060118 NCBI Caenorhabditis elegans F30A10.3 (F30A10.3) mRNA, complete cds. 11/11 None
F30A10.3.2 ENSEMBL cdna:known chromosome:CEL140:I:9500753:9502712:-1 gene:F30A10.3 11/11 None
F30A10.3.1 ENSEMBL cdna:known chromosome:CEL140:I:9500753:9502678:-1 gene:F30A10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9500743-9501023(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F30A10.3
Entrez Gene 172779 Entrez gene
SwissProt Q93644 EMBL-EBI
WormBase CE32396 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.17494.1.S1_AT similar to inositol hexaphosphate kinase 1 cfa
CHICKEN:GGA.9810.1.S1_S_AT similar to inositol hexaphosphate kinase 1 gga
CHICKEN:GGAAFFX.1663.1.S1_AT similar to inositol hexaphosphate kinase 1 gga
CHICKEN:GGAAFFX.25516.1.S1_AT similar to inositol hexaphosphate kinase 1 gga
HU35KSUBC:RC_T17456_S_AT inositol hexaphosphate kinase 1 hs
HU35KSUBD:RC_T90946_F_AT inositol hexaphosphate kinase 1 hs
HU35KSUBD:RC_T16989_F_AT inositol hexaphosphate kinase 1 hs
HU35KSUBD:RC_T03431_F_AT inositol hexaphosphate kinase 1 hs
HUGENEFL:D87452_AT inositol hexaphosphate kinase 1 hs
U133_X3P:HS.74579.0.S1_3P_AT inositol hexaphosphate kinase 1 hs
HG-U133A_2:212439_AT inositol hexaphosphate kinase 1 hs
HG-U133_PLUS_2:212439_AT inositol hexaphosphate kinase 1 hs
HG-U133A:212439_AT inositol hexaphosphate kinase 1 hs
HG-U95AV2:36154_AT inositol hexaphosphate kinase 1 hs
HG-U95B:43399_S_AT inositol hexaphosphate kinase 1 hs
HG-U133_PLUS_2:232769_AT Inositol hexaphosphate kinase 1 hs
HG-U133B:232769_AT Inositol hexaphosphate kinase 1 hs
U133_X3P:HS.258111.0.S1_3P_AT Inositol hexaphosphate kinase 1 hs
HG-U95D:88966_AT Inositol hexaphosphate kinase 1 hs
MOE430A:1438845_AT inositol hexaphosphate kinase 1 mm
MOUSE430A_2:1438845_AT inositol hexaphosphate kinase 1 mm
MOUSE430_2:1438845_AT inositol hexaphosphate kinase 1 mm
MOUSE430A_2:1438846_X_AT inositol hexaphosphate kinase 1 mm
MOE430A:1438846_X_AT inositol hexaphosphate kinase 1 mm
MOUSE430_2:1438846_X_AT inositol hexaphosphate kinase 1 mm
MOE430A:1422968_AT inositol hexaphosphate kinase 1 mm
MOUSE430A_2:1422968_AT inositol hexaphosphate kinase 1 mm
MOUSE430_2:1422968_AT inositol hexaphosphate kinase 1 mm
MG-U74AV2:94244_AT inositol hexaphosphate kinase 1 mm
MG-U74AV2:162092_F_AT inositol hexaphosphate kinase 1 mm
MOE430A:1452694_AT inositol hexaphosphate kinase 1 mm
MOUSE430A_2:1452694_AT inositol hexaphosphate kinase 1 mm
MOUSE430_2:1452694_AT inositol hexaphosphate kinase 1 mm
MOE430A:1422969_S_AT inositol hexaphosphate kinase 1 mm
MOUSE430A_2:1422969_S_AT inositol hexaphosphate kinase 1 mm
MOUSE430_2:1422969_S_AT inositol hexaphosphate kinase 1 mm
MU19KSUBA:TC15846_AT Mammalian inositol hexakisphosphate kinase 1 (Ip6k1) mm
MU19KSUBA:TC19569_AT Mammalian inositol hexakisphosphate kinase 1 (Ip6k1) mm
MU19KSUBA:TC22756_AT Mammalian inositol hexakisphosphate kinase 1 (Ip6k1) mm
MU19KSUBB:TC29069_AT Mammalian inositol hexakisphosphate kinase 1 (Ip6k1) mm
MU11KSUBA:T25571_RC_AT Mammalian inositol hexakisphosphate kinase 1 (Ip6k1) mm
RG-U34C:RC_AA819376_AT inositol hexaphosphate kinase 1 rn
RAE230A:1387904_AT inositol hexaphosphate kinase 1 rn
RAT230_2:1387904_AT inositol hexaphosphate kinase 1 rn
RAE230B:1378212_AT Inositol hexaphosphate kinase 1 rn
RAT230_2:1378212_AT Inositol hexaphosphate kinase 1 rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8440 inositol trisphosphate 3-kinase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03023 Hypothetical protein F30A10.3 [Caenorhabditis elegans] ref|NP_492519.2| F30A10.3 [Caenorhabditis elegans] 1.0E-180
blast CAE56711 Hypothetical protein CBG24497 [Caenorhabditis briggsae] 1.0E-164
blast XP_861785 PREDICTED: similar to inositol hexaphosphate kinase 1 isoform 4 [Canis familiaris] 2.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR005522 EMBL-EBI Inositol polyphosphate kinase 9.7E-107
Sequence
Target Sequence 
>C. ELEGANS:175338_AT
aaagtagaaatgttcctgaatatttaaagtatattttatcacttttttccgtcaactttt
aatgacatcctcccgatgtaaaactcctcccgtttgtatcattcccatctgatcccagtc
aattcatttcctctgcatcttacccatctttcttctctgcgtcgtttcgttctctccccc
ctaccaaatgggtctcattcaatttttattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGTAGAAATGTTCCTGAATATTT 162 1 33 Antisense
TCAACTTTTAATGACATCCTCCCGA 72 629 84 Antisense
GACATCCTCCCGATGTAAAACTCCT 510 361 96 Antisense
TGTAAAACTCCTCCCGTTTGTATCA 150 559 109 Antisense
CGTTTGTATCATTCCCATCTGATCC 489 247 123 Antisense
TTCCCATCTGATCCCAGTCAATTCA 544 697 134 Antisense
CTGATCCCAGTCAATTCATTTCCTC 115 239 141 Antisense
ATCCCAGTCAATTCATTTCCTCTGC 147 39 144 Antisense
CAGTCAATTCATTTCCTCTGCATCT 547 207 148 Antisense
CCCCTACCAAATGGGTCTCATTCAA 689 257 210 Antisense
AATGGGTCTCATTCAATTTTTATTT 486 163 219 Antisense
Sequence Source Affymetrix Proprietary Database