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[175337_at]

Description AV183655_rc /REP_DB=TREMBL Accession /GB=AV183655 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk654d8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 07      4grp_high_8_8 > 41      6grp_highest_nonorm > 60      6grp_total > 08      4grp_total > 54      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 499
1 2 3 4 range
A 452.4
(3)
P 		215.2
(-1.4)
P 		250
(-0.8)
P 		129
(-3)
P 		323
B 610.8
(3)
P 		255.7
(-1.3)
P 		226.8
(-1.7)
P 		115.8
(-3)
P 		495
C 370.9
(3)
P 		327.8
(2)
P 		178.4
(-1.5)
P 		111.8
(-3)
A 		259
avr 478
(3) 		266.2
(-0.5) 		218.4
(-1.3) 		118.9
(-3) 		359

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 569
1 2 3 4 5 6 range
A 584
(3)
P 		396.9
(0.3)
P 		217.5
(-2.3)
P 		321.7
(-0.8)
P 		319
(-0.8)
P 		166.4
(-3)
P 		418
B 663.6
(3)
P 		384.7
(-0.7)
P 		225.7
(-2.8)
P 		432.2
(-0.1)
P 		275.5
(-2.1)
P 		208.8
(-3)
P 		455
C 735.3
(3)
P 		312.6
(-1.6)
P 		271
(-2.1)
P 		468.3
(0.1)
P 		265.3
(-2.2)
P 		188.4
(-3)
P 		547
avr 661
(3) 		364.7
(-0.8) 		238.1
(-2.4) 		407.4
(-0.2) 		286.6
(-1.7) 		187.9
(-3) 		473
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 164.7
(3)
P 		46.7
(-1.9)
P 		65.4
(-1.1)
P 		18.9
(-3)
P 		146
B 194.8
(3)
P 		63.1
(-1.6)
P 		52.6
(-2)
P 		24.7
(-3)
P 		170
C 122.8
(3)
P 		94.2
(1.4)
P 		62.2
(-0.5)
P 		18.8
(-3)
A 		104
avr 160.8
(3) 		68
(-1) 		60.1
(-1.3) 		20.8
(-3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 232
1 2 3 4 5 6 range
A 107.7
(1)
P 		141.2
(3)
P 		47.4
(-2.6)
P 		81.6
(-0.6)
P 		96.2
(0.3)
P 		40.5
(-3)
P 		101
B 230.9
(3)
P 		128.1
(-0.5)
P 		54.8
(-3)
P 		114.5
(-1)
P 		111.9
(-1.1)
P 		77.9
(-2.2)
P 		176
C 272.6
(3)
P 		95.4
(-2.1)
P 		69
(-2.8)
P 		94.2
(-2.1)
P 		85.8
(-2.3)
P 		63.1
(-3)
P 		210
avr 203.7
(3) 		121.6
(-0.4) 		57.1
(-3) 		96.8
(-1.4) 		98
(-1.3) 		60.5
(-2.9) 		147
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175337_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20920
Sequence Type Exemplar sequence
Representative Public ID AV183655 NCBI
Target Description AV183655_rc /REP_DB=TREMBL Accession /GB=AV183655 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk654d8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000020177 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12122802:12130214:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12122680-12122960(-) 89.29 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE75090 Hypothetical protein CBG23011 [Caenorhabditis briggsae] 6.0E-74
blast CAA22096 Hypothetical protein Y75B8A.6 [Caenorhabditis elegans] ref|NP_499579.1| Y75B8A.6 [Caenorhabditis elegans] 5.0E-63
blast CAE75092 Hypothetical protein CBG23013 [Caenorhabditis briggsae] 2.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR002857 EMBL-EBI Zn-finger, CXXC type 1.1E-32
Pfam IPR002857 EMBL-EBI Zn-finger, CXXC type 1.0E-17
Pfam IPR002857 EMBL-EBI Zn-finger, CXXC type 4.5E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000020177 2 181-203,513-535
Sequence
Target Sequence 
>C. ELEGANS:175337_AT
ccgtttttctctccagcaaacatacattctgttcagggatccgtgtgtattgtctctctc
tctttctctctctctctctctcaccaaaattcttctttgtgcaattttcctacattttgt
aatattttttaattctcataataggttaagcttaaacccctaggcatccctaggctcccc
cacactcatcaaatcactcccaaaaattcgtttctttcgctttattatctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGTTTTTCTCTCCAGCAAACATAC 343 265 13 Antisense
TTTCTCTCCAGCAAACATACATTCT 429 671 18 Antisense
CATACATTCTGTTCAGGGATCCGTG 557 213 33 Antisense
TCAGGGATCCGTGTGTATTGTCTCT 92 623 45 Antisense
CTCTCTCACCAAAATTCTTCTTTGT 609 229 88 Antisense
CACCAAAATTCTTCTTTGTGCAATT 294 201 94 Antisense
TTGTGCAATTTTCCTACATTTTGTA 574 707 109 Antisense
TAATTCTCATAATAGGTTAAGCTTA 448 165 142 Antisense
TAAACCCCTAGGCATCCCTAGGCTC 333 637 165 Antisense
CACTCATCAAATCACTCCCAAAAAT 615 197 195 Antisense
TTCGTTTCTTTCGCTTTATTATCTC 591 695 219 Antisense
Sequence Source Affymetrix Proprietary Database