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[175336_at]

Description AU114749_rc /REP_DB=TREMBL Accession /GB=AU114749 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk727h8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 94      6grp_total > 77      4grp_total > 55      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 233.6
(-0.2)
P 		217.7
(-2.9)
P 		252.1
(3)
P 		217
(-3)
P 		35
B 271.6
(3)
P 		238.5
(-3)
P 		238.6
(-3)
P 		249.5
(-1)
P 		33
C 366.7
(3)
P 		254
(-2.3)
P 		239.7
(-3)
P 		243.9
(-2.8)
P 		127
avr 290.6
(3) 		236.7
(-3) 		243.5
(-2.2) 		236.8
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1374
1 2 3 4 5 6 range
A 277.3
(-2.2)
P 		181
(-3)
P 		294
(-2)
P 		405
(-1.1)
P 		517.5
(-0.1)
P 		879.4
(3)
P 		698
B 235.2
(-3)
P 		293.6
(-2.7)
P 		370.3
(-2.4)
P 		385.8
(-2.3)
P 		636.8
(-1.2)
P 		1538
(3)
P 		1303
C 163.6
(-3)
P 		460.1
(-1.1)
P 		267.2
(-2.3)
P 		398.5
(-1.5)
P 		432.1
(-1.3)
P 		1086.4
(3)
P 		923
avr 225.4
(-3) 		311.6
(-2.5) 		310.5
(-2.5) 		396.4
(-1.9) 		528.8
(-1.1) 		1167.9
(3) 		943
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 85.1
(3)
P 		47.3
(-1.3)
P 		65.9
(0.8)
P 		31.8
(-3)
P 		53
B 86.6
(3)
P 		58.9
(-2)
P 		55.3
(-2.6)
P 		53.2
(-3)
P 		33
C 121.4
(3)
P 		73
(-0.6)
P 		83.5
(0.2)
P 		41.1
(-3)
P 		80
avr 97.7
(3) 		59.7
(-1.1) 		68.2
(-0.2) 		42
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 522
1 2 3 4 5 6 range
A 51.1
(-3)
P 		64.4
(-2.5)
P 		64
(-2.5)
P 		102.7
(-1.1)
P 		156.2
(0.9)
P 		214.1
(3)
P 		163
B 81.8
(-3)
P 		97.7
(-2.8)
P 		89.9
(-2.9)
P 		102.2
(-2.8)
P 		258.7
(-0.8)
P 		573.5
(3)
P 		492
C 60.6
(-3)
P 		140.4
(-1.4)
P 		68
(-2.9)
P 		80.1
(-2.6)
P 		139.8
(-1.4)
P 		363.7
(3)
P 		303
avr 64.5
(-3) 		100.8
(-2.3) 		74
(-2.8) 		95
(-2.4) 		184.9
(-0.7) 		383.8
(3) 		319
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175336_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20150
Sequence Type Exemplar sequence
Representative Public ID AU114749 NCBI
Target Description AU114749_rc /REP_DB=TREMBL Accession /GB=AU114749 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk727h8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059722(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059722 NCBI Caenorhabditis elegans D2030.8 (D2030.8) mRNA, complete cds. 11/11 B 
D2030.8 ENSEMBL cdna:known chromosome:CEL140:I:7599426:7603325:1 gene:D2030.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000031291 5/11 Cross Hyb Matching Probes None
SNAP00000031279 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7602614-7603002(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2030.8
Entrez Gene 172517 Entrez gene
SwissProt P90793 EMBL-EBI
WormBase CE28545 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98120 Hypothetical protein D2030.8 [Caenorhabditis elegans] ref|NP_492123.1| D2030.8 [Caenorhabditis elegans] 0.0
blast CAE66620 Hypothetical protein CBG11955 [Caenorhabditis briggsae] 8.0E-73
blast XP_593566 PREDICTED: similar to D2030.8 isoform 1 [Bos taurus] ref|XP_869458.1| PREDICTED: similar to D2030.8 isoform 2 [Bos taurus] 1.0E-30
Sequence
Target Sequence 
>C. ELEGANS:175336_AT
ataatccttatagaatcgccgacgccagtccaccttcgtcaagtcagtatcgaaaacgac
gtcgcttctccggatctcgtcacgaatatcgttaatctatgtgtacaatgtgttcccaac
gggtgttaaacagttacatgtaatatgtctcaggctttttactccgaaattttatttccc
aacattttacaaaccattatttggtgtaaaattttatttaattgttttcaaattcttaaa
aattactagttcccgttcaaactgaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAATCCTTATAGAATCGCCGACGC 231 25 18 Antisense
TCCACCTTCGTCAAGTCAGTATCGA 533 587 46 Antisense
TATCGAAAACGACGTCGCTTCTCCG 122 659 65 Antisense
CTTCTCCGGATCTCGTCACGAATAT 522 219 82 Antisense
GAATATCGTTAATCTATGTGTACAA 318 325 101 Antisense
ATGTGTACAATGTGTTCCCAACGGG 559 47 116 Antisense
TGTGTTCCCAACGGGTGTTAAACAG 349 549 126 Antisense
ATATGTCTCAGGCTTTTTACTCCGA 60 19 160 Antisense
TCTCAGGCTTTTTACTCCGAAATTT 479 611 165 Antisense
TATTTCCCAACATTTTACAAACCAT 651 653 190 Antisense
TACTAGTTCCCGTTCAAACTGAACA 579 645 261 Antisense
Sequence Source Affymetrix Proprietary Database