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[175335_at]

Description AU113748_rc /REP_DB=TREMBL Accession /GB=AU113748 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk711b9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 67      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 78      6grp_total > 67      4grp_total > 13      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1837
1 2 3 4 range
A 1743.2
(0.6)
P 		1923.4
(1.6)
P 		1072.3
(-3)
P 		2190.6
(3)
P 		1118
B 1879.2
(-1.2)
P 		1624.9
(-2.2)
P 		1428.9
(-3)
P 		2909.5
(3)
P 		1481
C 2368.8
(1.3)
P 		1385.4
(-3)
P 		1376.9
(-3)
P 		2753.4
(3)
P 		1377
avr 1997.1
(0.2) 		1644.6
(-1.4) 		1292.7
(-3) 		2617.8
(3) 		1325

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 900
1 2 3 4 5 6 range
A 1603.5
(-0.2)
P 		1577.3
(-0.4)
P 		1483.6
(-1.3)
P 		1447.6
(-1.7)
P 		1314.6
(-3)
P 		1926.9
(3)
P 		612
B 1482.9
(-0.2)
P 		1448.8
(-0.5)
P 		1094.9
(-3)
P 		1399.2
(-0.8)
P 		1395.3
(-0.9)
P 		1934.2
(3)
P 		839
C 1462.4
(-1.8)
P 		1332.7
(-3)
P 		1669.2
(0)
P 		1429.7
(-2.1)
P 		1501.9
(-1.5)
P 		1995.2
(3)
P 		663
avr 1516.3
(-1.8) 		1452.9
(-2.5) 		1415.9
(-2.9) 		1425.5
(-2.8) 		1403.9
(-3) 		1952.1
(3) 		548
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 504
1 2 3 4 range
A 634.7
(3)
P 		417.5
(-0.7)
P 		280.3
(-3)
P 		320.7
(-2.3)
P 		354
B 599.3
(2.6)
P 		401.3
(-1.5)
P 		331.1
(-3)
P 		620
(3)
P 		289
C 784.1
(3)
P 		398.3
(-3)
P 		479.9
(-1.7)
P 		464.3
(-2)
P 		386
avr 672.7
(3) 		405.7
(-2.2) 		363.8
(-3) 		468.3
(-1) 		309

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 455
1 2 3 4 5 6 range
A 295.6
(-3)
P 		561
(3)
P 		323.1
(-2.4)
P 		367.1
(-1.4)
P 		396.7
(-0.7)
P 		469.1
(0.9)
P 		265
B 516
(0.3)
P 		482.3
(-0.1)
P 		265.9
(-3)
P 		370.6
(-1.6)
P 		566.9
(1)
P 		721.3
(3)
P 		455
C 542.1
(1)
P 		406.6
(-1.1)
P 		424.8
(-0.8)
P 		287.5
(-3)
P 		486
(0.1)
P 		667.9
(3)
P 		380
avr 451.2
(-0.6) 		483.3
(0.1) 		337.9
(-3) 		341.7
(-2.9) 		483.2
(0.1) 		619.4
(3) 		282
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175335_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20149
Sequence Type Exemplar sequence
Representative Public ID AU113748 NCBI
Target Description AU113748_rc /REP_DB=TREMBL Accession /GB=AU113748 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk711b9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059243(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059243 NCBI Caenorhabditis elegans F46F11.6 (F46F11.6) mRNA, complete cds. 11/11 A 
F46F11.6 ENSEMBL cdna:known chromosome:CEL140:I:5616615:5618554:-1 gene:F46F11.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023448 4/11 Cross Hyb Matching Probes None
GENEFINDER00000023461 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5616667-5616954(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46F11.6
Entrez Gene 172218 Entrez gene
SwissProt P91305 EMBL-EBI
WormBase CE30535 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21383 Hypothetical protein F46F11.6 [Caenorhabditis elegans] ref|NP_491644.2| F46F11.6 [Caenorhabditis elegans] 0.0
blast T25766 hypothetical protein F46F11.6 - Caenorhabditis elegans 0.0
blast CAE68922 Hypothetical protein CBG14901 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.6E-6
Sequence
Target Sequence 
>C. ELEGANS:175335_AT
atgtctcgaattgtctacgaaaggtgttcagtgcaatgccccaatatggtcagctcagag
gatcttgcaagacagcagcaaagagtttaatattaattatcttggtcttaacttttgaaa
accgtctttggtccttattatcagattcccaaaacgttgagtttagtattgtgatcccca
tctactcgaattgcaggtttccagaaactttgttttatcccgtcagaatgatgtaacgtt
tccaatttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCTCGAATTGTCTACGAAAGGT 406 47 13 Antisense
GAAAGGTGTTCAGTGCAATGCCCCA 489 361 31 Antisense
GCAATGCCCCAATATGGTCAGCTCA 98 321 45 Antisense
GTCAGCTCAGAGGATCTTGCAAGAC 468 465 61 Antisense
TAATTATCTTGGTCTTAACTTTTGA 364 633 106 Antisense
AACCGTCTTTGGTCCTTATTATCAG 129 145 132 Antisense
GGTCCTTATTATCAGATTCCCAAAA 15 503 142 Antisense
GAGTTTAGTATTGTGATCCCCATCT 81 399 171 Antisense
TCCCCATCTACTCGAATTGCAGGTT 561 595 187 Antisense
AACTTTGTTTTATCCCGTCAGAATG 79 1 218 Antisense
GAATGATGTAACGTTTCCAATTTTA 326 331 238 Antisense
Sequence Source Affymetrix Proprietary Database