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[175334_at]

Description AU114540_rc /REP_DB=TREMBL Accession /GB=AU114540 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk720e1 : 3prime end, single read.
Cluster 6grp_total > 87      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 9.2
(-3)
A 		9.6
(-3)
A 		78.3
(2.1)
P 		90.5
(3)
A 		81
B 42.2
(-3)
A 		57.9
(-1.7)
A 		48.2
(-2.5)
A 		113.7
(3)
P 		72
C 49.4
(-2.2)
A 		43.8
(-2.7)
A 		40.7
(-3)
A 		106.4
(3)
P 		66
avr 33.6
(-3) 		37.1
(-2.7) 		55.7
(-1.1) 		103.5
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 332
1 2 3 4 5 6 range
A 5.8
(-3)
A 		32.9
(-2.4)
A 		38.9
(-2.2)
A 		48.7
(-2)
P 		174.4
(0.9)
P 		267.6
(3)
P 		262
B 32
(-2.8)
A 		19.7
(-3)
A 		67.9
(-2.1)
P 		88.6
(-1.6)
P 		179.2
(0.1)
P 		325.5
(3)
P 		306
C 4.1
(-3)
A 		37.9
(-2.4)
A 		13
(-2.8)
A 		99.4
(-1.3)
P 		149.9
(-0.4)
P 		336.1
(3)
P 		332
avr 14
(-3) 		30.2
(-2.7) 		39.9
(-2.5) 		78.9
(-1.7) 		167.8
(0.1) 		309.7
(3) 		296
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 3.3
(-2.6)
A 		2.1
(-3)
A 		20.5
(3)
P 		13.2
(0.6)
A 		18
B 13.4
(-2)
A 		14.3
(-1.6)
A 		11.2
(-3)
A 		24.2
(3)
P 		13
C 16.4
(1.3)
A 		12.6
(-3)
A 		14.2
(-1.2)
A 		17.9
(3)
P 		5
avr 11
(-2.1) 		9.7
(-3) 		15.3
(0.9) 		18.4
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 1.1
(-3)
A 		11.7
(-2)
A 		8.5
(-2.3)
A 		12.3
(-2)
P 		52.6
(1.8)
P 		65.1
(3)
P 		64
B 11.1
(-2.8)
A 		6.6
(-3)
A 		16.5
(-2.5)
P 		23.5
(-2.1)
P 		72.8
(0.5)
P 		121.4
(3)
P 		115
C 1.5
(-3)
A 		11.6
(-2.5)
A 		3.3
(-2.9)
A 		20
(-2)
P 		48.5
(-0.5)
P 		112.5
(3)
P 		111
avr 4.6
(-3) 		10
(-2.7) 		9.4
(-2.7) 		18.6
(-2.1) 		58
(0.4) 		99.7
(3) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175334_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20255
Sequence Type Exemplar sequence
Representative Public ID AU114540 NCBI
Target Description AU114540_rc /REP_DB=TREMBL Accession /GB=AU114540 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk720e1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059177(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059177 NCBI Caenorhabditis elegans F55A12.10 (F55A12.10) mRNA, complete cds. 11/11 None
SNAP00000029047 ENSEMBL cdna:SNAP chromosome:CEL140:I:5367013:5367819:-1 11/11 None
GENEFINDER00000029057 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5367013:5367666:-1 11/11 None
F55A12.10 ENSEMBL cdna:known chromosome:CEL140:I:5367013:5367832:-1 gene:F55A12.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5367023-5367400(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55A12.10
Entrez Gene 172186 Entrez gene
SwissProt Q95R14 EMBL-EBI
WormBase CE28451 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73876 Hypothetical protein F55A12.10 [Caenorhabditis elegans] ref|NP_491578.1| F55A12.10 [Caenorhabditis elegans] 1.0E-100
blast AAK73876 Hypothetical protein F55A12.10 [Caenorhabditis elegans] ref|NP_491578.1| F55A12.10 [Caenorhabditis elegans] 4.0E-86
blast AAK73876 Hypothetical protein F55A12.10 [Caenorhabditis elegans] ref|NP_491578.1| F55A12.10 [Caenorhabditis elegans] 4.0E-66
blast CAE66930 Hypothetical protein CBG12322 [Caenorhabditis briggsae] 5.0E-15
blast CAE66930 Hypothetical protein CBG12322 [Caenorhabditis briggsae] 8.0E-15
blast CAE66930 Hypothetical protein CBG12322 [Caenorhabditis briggsae] 9.0E-15
blast CAB54207 Hypothetical protein D1081.9 [Caenorhabditis elegans] ref|NP_492301.1| D1081.9 [Caenorhabditis elegans] 6.0E-14
Sequence
Target Sequence 
>C. ELEGANS:175334_AT
gatattgaacgcgagaacgagaagcttcggaatttaatcagtgctctcgaactgaaagtt
gccagttctcgtgatatcgatgatgacgagtttttcatgcaaggtactccaacttcttca
aatccttccgttgctggttcagatgtagataatgacgaattgctcgattatgatcttcta
ggattgaggaatcgatctgattcatcatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATTGAACGCGAGAACGAGAAGC 484 427 49 Antisense
GCTTCGGAATTTAATCAGTGCTCTC 559 305 72 Antisense
AGTGCTCTCGAACTGAAAGTTGCCA 100 61 88 Antisense
AAAGTTGCCAGTTCTCGTGATATCG 330 123 103 Antisense
GCCAGTTCTCGTGATATCGATGATG 286 281 109 Antisense
GATGATGACGAGTTTTTCATGCAAG 472 411 127 Antisense
CATGCAAGGTACTCCAACTTCTTCA 260 201 144 Antisense
CAACTTCTTCAAATCCTTCCGTTGC 378 189 158 Antisense
ATCCTTCCGTTGCTGGTTCAGATGT 259 39 170 Antisense
GAATTGCTCGATTATGATCTTCTAG 61 325 205 Antisense
GAGGAATCGATCTGATTCATCATCA 527 405 234 Antisense
Sequence Source Affymetrix Proprietary Database