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[175333_s_at]

Description AV183564_rc /REP_DB=TREMBL Accession /GB=AV183564 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk653c3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 50      6grp_total > 27      4grp_total > 54      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 638
1 2 3 4 range
A 940.9
(3)
P 		552.8
(-0.7)
P 		307.7
(-3)
P 		307.5
(-3)
P 		633
B 830.6
(3)
P 		629.6
(-0)
P 		588.2
(-0.6)
P 		429.5
(-3)
P 		401
C 945.1
(3)
P 		572.6
(-0.8)
P 		569.8
(-0.8)
P 		355.6
(-3)
P 		590
avr 905.5
(3) 		585
(-0.6) 		488.6
(-1.6) 		364.2
(-3) 		541

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 523
1 2 3 4 5 6 range
A 786.4
(3)
P 		549.7
(0)
P 		392
(-1.9)
P 		305.9
(-3)
P 		528.4
(-0.2)
P 		424.4
(-1.5)
P 		481
B 693.4
(2.1)
P 		601
(0.1)
P 		735.3
(3)
P 		568.7
(-0.6)
P 		460.7
(-3)
P 		507.1
(-2)
P 		275
C 599.6
(1.9)
P 		559.6
(1.3)
P 		263.3
(-3)
P 		475.2
(0.1)
P 		391.7
(-1.1)
P 		674.5
(3)
P 		411
avr 693.1
(3) 		570.1
(-0) 		463.5
(-2.7) 		449.9
(-3) 		460.3
(-2.7) 		535.3
(-0.9) 		243
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 298
1 2 3 4 range
A 342.6
(3)
P 		120
(-1.5)
P 		80.4
(-2.3)
P 		45
(-3)
P 		298
B 264.9
(3)
P 		155.5
(-0.8)
P 		136.3
(-1.4)
P 		91.5
(-3)
P 		173
C 312.9
(3)
P 		164.6
(-0.5)
P 		198.6
(0.3)
P 		60
(-3)
P 		253
avr 306.8
(3) 		146.7
(-1) 		138.4
(-1.2) 		65.5
(-3) 		241

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 145
(0.4)
P 		195.5
(3)
P 		85.4
(-2.6)
P 		77.6
(-3)
P 		159.4
(1.2)
P 		103.3
(-1.7)
P 		118
B 241.3
(3)
P 		200
(0.3)
P 		178.5
(-1.2)
P 		150.6
(-3)
P 		187.2
(-0.6)
P 		189.1
(-0.5)
P 		91
C 222.2
(2.9)
P 		170.7
(0.9)
P 		67
(-3)
P 		95.6
(-1.9)
P 		126.8
(-0.7)
P 		225.8
(3)
P 		159
avr 202.8
(3) 		188.7
(2.1) 		110.3
(-2.8) 		107.9
(-3) 		157.8
(0.2) 		172.7
(1.1) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175333_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22441
Sequence Type Exemplar sequence
Representative Public ID AV183564 NCBI
Target Description AV183564_rc /REP_DB=TREMBL Accession /GB=AV183564 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk653c3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029577(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029577 NCBI Caenorhabditis elegans High temperature-Induced Dauer formation family member (hid-1) (hid-1) mRNA, complete cds. 11/11 None
K02E10.2a ENSEMBL cdna:known chromosome:CEL140:X:2489041:2494331:1 gene:K02E10.2 11/11 A 
K02E10.2b ENSEMBL cdna:known chromosome:CEL140:X:2489083:2494268:1 gene:K02E10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180553 2 1 NM_001029577 175333_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2493973-2494269(+) 100.0 100.0
Public Domain and Genome References
Ensembl K02E10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47068 High temperature-induced dauer formation protein 1, isoform a [Caenorhabditis elegans] ref|NP_001024748.1| High temperature-Induced Dauer formation family member (hid-1) [Caenorhabditis elegans] gb|AAL55425.1| HID-1 [Caenorhabditis elegans] 0.0
blast AAP68937 High temperature-induced dauer formation protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024749.1| High temperature-Induced Dauer formation family member (hid-1) [Caenorhabditis elegans] 0.0
blast CAE58868 Hypothetical protein CBG02098 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:175333_S_AT
caacgagcgtgaacaatctagaacatgtgtcactttatgaatatcgcttgtgcattatcc
tgcatttcgcatatcttctttatgttgtgcatgtgaagtttttcttgttttcttcctctc
attctcatccccatttttttttcaataccacatcaaacaagcgttcgagcttcgtatatc
tgtgttcacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACGAGCGTGAACAATCTAGAACA 617 187 76 Antisense
AACAATCTAGAACATGTGTCACTTT 57 135 87 Antisense
GAACATGTGTCACTTTATGAATATC 227 351 96 Antisense
GAATATCGCTTGTGCATTATCCTGC 445 325 114 Antisense
GCTTGTGCATTATCCTGCATTTCGC 471 307 121 Antisense
GCATTATCCTGCATTTCGCATATCT 24 309 127 Antisense
ATCCTGCATTTCGCATATCTTCTTT 545 39 132 Antisense
ATATCTTCTTTATGTTGTGCATGTG 223 21 146 Antisense
CCACATCAAACAAGCGTTCGAGCTT 421 275 223 Antisense
GTTCGAGCTTCGTATATCTGTGTTC 254 443 238 Antisense
GAGCTTCGTATATCTGTGTTCACGT 126 389 242 Antisense
Sequence Source Affymetrix Proprietary Database