[Home] | [Total List]

[175332_at]

Description AV180677_rc /REP_DB=TREMBL Accession /GB=AV180677 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk610f7 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 76      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_total > 67      4grp_total > 32      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 109.5
(-3)
P 		137.8
(0.4)
P 		138.8
(0.5)
P 		159.7
(3)
P 		50
B 125.1
(-0.5)
P 		137.2
(0.8)
P 		157.6
(3)
P 		101.3
(-3)
P 		56
C 127.5
(-1.2)
P 		112.5
(-3)
P 		127.3
(-1.2)
P 		162.9
(3)
P 		50
avr 120.7
(-3) 		129.2
(-0.5) 		141.2
(3) 		141.3
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 92.2
(-0.8)
P 		117.7
(2.1)
P 		72.4
(-3)
P 		86.9
(-1.4)
P 		118.8
(2.3)
P 		125.3
(3)
P 		53
B 77.2
(-3)
P 		104.4
(-1.7)
P 		133.8
(-0.3)
P 		129.8
(-0.5)
P 		101.7
(-1.8)
P 		202.9
(3)
P 		126
C 123.4
(0.2)
P 		164.2
(3)
P 		76.9
(-3)
A 		123.5
(0.2)
P 		115.4
(-0.4)
P 		153.8
(2.3)
P 		87
avr 97.6
(-2.7) 		128.8
(0.1) 		94.4
(-3) 		113.4
(-1.3) 		112
(-1.4) 		160.7
(3) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 39.9
(3)
P 		29.9
(-0.6)
P 		36.3
(1.7)
P 		23.4
(-3)
P 		17
B 39.9
(3)
P 		33.9
(1)
P 		36.5
(1.9)
P 		21.6
(-3)
P 		18
C 42.2
(2.2)
P 		32.3
(-1.3)
P 		44.4
(3)
P 		27.5
(-3)
P 		17
avr 40.7
(3) 		32
(-0.2) 		39.1
(2.4) 		24.2
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 17
(-2.7)
P 		41.9
(3)
P 		15.8
(-3)
P 		22
(-1.6)
P 		35.9
(1.6)
P 		30.5
(0.4)
P 		26
B 26.9
(-3)
P 		34.8
(-2)
P 		32.5
(-2.3)
P 		34.4
(-2.1)
P 		41.3
(-1.2)
P 		75.7
(3)
P 		49
C 45.7
(1.9)
P 		50.1
(2.7)
P 		19.6
(-3)
A 		24.8
(-2)
P 		37.3
(0.3)
P 		51.5
(3)
P 		32
avr 29.9
(-1.5) 		42.3
(0.9) 		22.6
(-3) 		27.1
(-2.1) 		38.2
(0.1) 		52.6
(3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175332_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22378
Sequence Type Exemplar sequence
Representative Public ID AV180677 NCBI
Target Description AV180677_rc /REP_DB=TREMBL Accession /GB=AV180677 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk610f7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K11E4.4 ENSEMBL cdna:known chromosome:CEL140:X:13724584:13734269:1 gene:K11E4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13733980-13734259(+) 100.0 100.0
Public Domain and Genome References
Ensembl K11E4.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94159 Hypothetical protein K11E4.4 [Caenorhabditis elegans] ref|NP_510297.1| Temporarily Assigned Gene name family member (tag-207) [Caenorhabditis elegans] 0.0
blast CAE63090 Hypothetical protein CBG07380 [Caenorhabditis briggsae] 0.0
blast NP_059098 Rho guanine nucleotide exchange factor (GEF7) [Mus musculus] gb|AAH44838.1| Rho guanine nucleotide exchange factor (GEF7) [Mus musculus] dbj|BAC35033.1| unnamed protein product [Mus musculus] 4.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR001452 EMBL-EBI SH3 1.5E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
K11E4.4 3 21-43,58-80,144-166
Sequence
Target Sequence 
>C. ELEGANS:175332_AT
gaacccatatcaaacattatttccttctccgtcttcctttcgcactcccagaaaatacca
acaaccacgacctcttccttctcgactttattactcctctatttctccaacttttctcga
cctatgtgccttgactcgaccacctctttcgtgttttttttttcacaaatcaatgttgtt
ttttgcctgatttccgatttcttagcatttatatatttttccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCCATATCAAACATTATTTCCT 441 345 23 Antisense
TATCAAACATTATTTCCTTCTCCGT 125 661 30 Antisense
TTCCTTTCGCACTCCCAGAAAATAC 367 687 56 Antisense
GCACTCCCAGAAAATACCAACAACC 132 311 64 Antisense
CAGAAAATACCAACAACCACGACCT 431 205 71 Antisense
AATGTTGTTTTTTGCCTGATTTCCG 207 165 194 Antisense
TGTTTTTTGCCTGATTTCCGATTTC 382 561 199 Antisense
TTTGCCTGATTTCCGATTTCTTAGC 412 669 204 Antisense
GCCTGATTTCCGATTTCTTAGCATT 161 283 207 Antisense
ATTTCCGATTTCTTAGCATTTATAT 470 17 212 Antisense
TCTTAGCATTTATATATTTTTCCAA 101 617 222 Antisense
Sequence Source Affymetrix Proprietary Database