[Home] | [Total List]

[175330_at]

Description AV177670_rc /REP_DB=TREMBL Accession /GB=AV177670 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk531h2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 15      4grp_highest_8_8 > 42      4grp_high_8_8 > 40      6grp_highest_nonorm > 51      6grp_total > 15      4grp_total > 55      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 460
1 2 3 4 range
A 807.4
(3)
P 		411.8
(-2.3)
P 		488.1
(-1.2)
P 		356
(-3)
P 		451
B 788.9
(3)
P 		491.9
(-2.9)
P 		501.7
(-2.7)
P 		487.1
(-3)
P 		302
C 815.6
(3)
P 		519.9
(-1.8)
P 		614.2
(-0.3)
P 		445.9
(-3)
P 		370
avr 804
(3) 		474.5
(-2.3) 		534.7
(-1.3) 		429.7
(-3) 		374

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 462
1 2 3 4 5 6 range
A 763.4
(3)
P 		694.6
(1.8)
P 		533.8
(-0.9)
P 		425.2
(-2.8)
P 		566
(-0.4)
P 		413.2
(-3)
P 		350
B 833
(3)
P 		668.5
(0.3)
P 		524.7
(-2.1)
P 		542.9
(-1.8)
P 		469
(-3)
P 		480.3
(-2.8)
P 		364
C 634.5
(2.5)
P 		657.8
(3)
P 		459.5
(-1.1)
P 		516.5
(0)
P 		370.7
(-3)
P 		490
(-0.5)
P 		287
avr 743.6
(3) 		673.6
(1.5) 		506
(-2) 		494.9
(-2.3) 		468.6
(-2.8) 		461.2
(-3) 		282
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 242
1 2 3 4 range
A 294
(3)
P 		89.4
(-2.1)
P 		127.6
(-1.1)
P 		52.1
(-3)
P 		242
B 251.6
(3)
P 		121.5
(-2.3)
P 		116.3
(-2.5)
P 		103.8
(-3)
P 		148
C 270
(3)
P 		149.5
(-0.7)
P 		214.1
(1.3)
P 		75.2
(-3)
P 		195
avr 271.9
(3) 		120.1
(-1.7) 		152.7
(-0.7) 		77
(-3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 140.7
(-1.4)
P 		247
(3)
P 		116.3
(-2.4)
P 		107.8
(-2.7)
P 		170.8
(-0.1)
P 		100.6
(-3)
P 		146
B 289.9
(3)
P 		222.5
(0.5)
P 		127.4
(-3)
P 		143.8
(-2.4)
P 		190.5
(-0.7)
P 		179.1
(-1.1)
P 		163
C 235.2
(3)
P 		200.7
(1.4)
P 		117
(-2.4)
P 		103.9
(-3)
P 		120
(-2.3)
P 		164
(-0.3)
P 		131
avr 221.9
(2.9) 		223.4
(3) 		120.2
(-2.9) 		118.5
(-3) 		160.4
(-0.6) 		147.9
(-1.3) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175330_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22304
Sequence Type Exemplar sequence
Representative Public ID AV177670 NCBI
Target Description AV177670_rc /REP_DB=TREMBL Accession /GB=AV177670 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk531h2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077860(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077860 NCBI Caenorhabditis elegans F18H3.4 (F18H3.4) mRNA, complete cds. 11/11 None
F18H3.4 ENSEMBL cdna:known chromosome:CEL140:X:13529005:13531951:1 gene:F18H3.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13531441-13531782(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F18H3.4
Entrez Gene 181474 Entrez gene
SwissProt Q19580 EMBL-EBI
WormBase CE23671 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90445 Hypothetical protein F18H3.4 [Caenorhabditis elegans] ref|NP_510261.1| F18H3.4 [Caenorhabditis elegans] 0.0
blast CAE63131 Hypothetical protein CBG07429 [Caenorhabditis briggsae] 1.0E-177
Sequence
Target Sequence 
>C. ELEGANS:175330_AT
gagaattgatgcctttactacgtattgtatttaaaaattaaaaatctccattttgtgctt
gtattatcgttccctcgaccttccttcaaaatttgttttccgggttaccatttccccttt
ctttctgttatgttctaggctctatgagttgttttgaaaattgaaactctctcttatttt
tcatgccatatattcatttaatttgatactccttattcacttccgatcaccacccacttc
ctcacaagtagatctagtctcgtagtttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAATTGATGCCTTTACTACGTAT 372 391 22 Antisense
ATCTCCATTTTGTGCTTGTATTATC 466 33 65 Antisense
TTTTGTGCTTGTATTATCGTTCCCT 475 677 72 Antisense
CCCCTTTCTTTCTGTTATGTTCTAG 476 261 135 Antisense
TTTCTGTTATGTTCTAGGCTCTATG 518 671 143 Antisense
AGGCTCTATGAGTTGTTTTGAAAAT 348 53 158 Antisense
TTGAAAATTGAAACTCTCTCTTATT 364 703 175 Antisense
CTCTCTCTTATTTTTCATGCCATAT 461 231 188 Antisense
TTTGATACTCCTTATTCACTTCCGA 576 667 223 Antisense
CACCCACTTCCTCACAAGTAGATCT 145 201 252 Antisense
AAGTAGATCTAGTCTCGTAGTTTCT 368 157 267 Antisense
Sequence Source Affymetrix Proprietary Database