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[175327_at]

Description AV185088_rc /REP_DB=TREMBL Accession /GB=AV185088 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk673d8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 97      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 83      6grp_total > 96      4grp_total > 01      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 378.4
(-2.1)
P 		349.4
(-3)
P 		394.1
(-1.7)
P 		548.6
(3)
P 		199
B 409
(-1.1)
P 		350.6
(-3)
P 		419.3
(-0.7)
P 		531.2
(3)
P 		181
C 325.6
(-2.4)
P 		305.9
(-3)
P 		376.8
(-0.8)
P 		495.1
(3)
P 		189
avr 371
(-1.9) 		335.3
(-3) 		396.7
(-1.1) 		525
(3) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 574
1 2 3 4 5 6 range
A 425.5
(-1.3)
P 		336.9
(-3)
P 		433.6
(-1.1)
P 		505.8
(0.3)
P 		594.1
(2)
P 		647.5
(3)
P 		311
B 231.6
(-3)
P 		394
(-0.6)
P 		450.1
(0.2)
P 		525.8
(1.3)
P 		597.2
(2.4)
P 		640.1
(3)
P 		409
C 365.9
(-2.8)
P 		394.5
(-2.4)
P 		352.9
(-3)
P 		527.6
(-0.7)
P 		591.6
(0.2)
P 		805.9
(3)
P 		453
avr 341
(-3) 		375.1
(-2.4) 		412.2
(-1.8) 		519.7
(0) 		594.3
(1.3) 		697.8
(3) 		357
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 137.8
(3)
P 		75.8
(-3)
P 		103
(-0.4)
P 		80.3
(-2.6)
P 		62
B 130.4
(3)
P 		86.6
(-3)
P 		97.2
(-1.5)
P 		113.2
(0.6)
P 		44
C 107.8
(0.1)
P 		87.9
(-2.4)
P 		131.3
(3)
P 		83.5
(-3)
P 		48
avr 125.3
(3) 		83.4
(-3) 		110.5
(0.9) 		92.3
(-1.7) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 78.4
(-3)
P 		119.8
(-0.5)
P 		94.4
(-2)
P 		128.3
(-0)
P 		179.3
(3)
P 		157.7
(1.7)
P 		101
B 80.6
(-3)
P 		131.2
(-1.1)
P 		109.3
(-1.9)
P 		139.3
(-0.8)
P 		242.6
(3)
P 		238.7
(2.9)
P 		162
C 135.6
(-1.5)
P 		120.4
(-2)
P 		89.8
(-3)
P 		106.1
(-2.5)
P 		191.4
(0.4)
P 		269.8
(3)
P 		180
avr 98.2
(-3) 		123.8
(-1.7) 		97.8
(-3) 		124.6
(-1.7) 		204.4
(2.1) 		222.1
(3) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175327_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20153
Sequence Type Exemplar sequence
Representative Public ID AV185088 NCBI
Target Description AV185088_rc /REP_DB=TREMBL Accession /GB=AV185088 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk673d8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182047(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182047 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-296) (tag-296) mRNA, complete cds. 11/11 None
F49D11.9b ENSEMBL cdna:known chromosome:CEL140:I:10941938:10943837:-1 gene:F49D11.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172997 2 1 NM_060449 184379_at (11)
NM_182047 175327_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10941939-10942221(-) 100.0 100.0
Public Domain and Genome References
Ensembl F49D11.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO26011 Temporarily assigned gene name protein 296, isoform b [Caenorhabditis elegans] ref|NP_871847.1| Temporarily Assigned Gene name family member (tag-296) [Caenorhabditis elegans] 1.0E-158
blast AAB96714 Temporarily assigned gene name protein 296, isoform a [Caenorhabditis elegans] ref|NP_492850.1| Temporarily Assigned Gene name family member (tag-296) [Caenorhabditis elegans] 1.0E-135
blast CAE73037 Hypothetical protein CBG20406 [Caenorhabditis briggsae] 1.0E-78
Sequence
Target Sequence 
>C. ELEGANS:175327_AT
ctgtccacgagctccataaaatcgcataatggtcttggaaaatcgatttgtctgcacaaa
attgttctgaaaatataatttccctctgaaaatcctcatttttaagccattctgatccaa
tcaaaaacacatttttagcccaaactacgcattttcatgtccataatgtatttttaccct
ccaaatttattggttttcatccatttcttccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGTCCACGAGCTCCATAAAATCGC 472 239 35 Antisense
AATCGCATAATGGTCTTGGAAAATC 57 169 54 Antisense
TTGGAAAATCGATTTGTCTGCACAA 453 709 69 Antisense
TTGTCTGCACAAAATTGTTCTGAAA 31 709 82 Antisense
ATAATTTCCCTCTGAAAATCCTCAT 13 13 109 Antisense
AAATCCTCATTTTTAAGCCATTCTG 249 119 124 Antisense
TTTTAAGCCATTCTGATCCAATCAA 50 675 134 Antisense
CACATTTTTAGCCCAAACTACGCAT 136 189 162 Antisense
AACTACGCATTTTCATGTCCATAAT 38 141 177 Antisense
GTCCATAATGTATTTTTACCCTCCA 297 477 193 Antisense
TATTGGTTTTCATCCATTTCTTCCC 406 665 222 Antisense
Sequence Source Affymetrix Proprietary Database