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[175324_s_at]

Description AU113125_rc /REP_DB=TREMBL Accession /GB=AU113125 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk703a9 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 86      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_total > 77      4grp_total > 01      6grp_cgc > 58      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 270
1 2 3 4 range
A 68.8
(-3)
P 		70.2
(-3)
P 		91.5
(-2.4)
P 		308.5
(3)
P 		240
B 107.1
(-3)
P 		136.6
(-1.9)
P 		154.9
(-1.2)
P 		262.7
(3)
P 		156
C 139.9
(-1.7)
P 		83.1
(-3)
P 		102.4
(-2.5)
P 		338.6
(3)
P 		256
avr 105.3
(-2.7) 		96.6
(-3) 		116.3
(-2.4) 		303.3
(3) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 519
1 2 3 4 5 6 range
A 96.3
(-3)
A 		162.9
(-1.8)
P 		146.9
(-2.1)
P 		161.9
(-1.9)
P 		223.3
(-0.8)
P 		438.6
(3)
P 		342
B 71.8
(-3)
P 		139.6
(-2.1)
P 		160.5
(-1.8)
P 		115.1
(-2.4)
P 		286.2
(-0.1)
P 		520.7
(3)
P 		449
C 66.9
(-3)
P 		159
(-1.9)
P 		106.9
(-2.5)
P 		111.1
(-2.5)
P 		191.8
(-1.6)
P 		585.6
(3)
P 		519
avr 78.3
(-3) 		153.8
(-2) 		138.1
(-2.2) 		129.4
(-2.3) 		233.8
(-0.9) 		515
(3) 		437
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 25
(-1)
P 		15.2
(-3)
P 		23.9
(-1.3)
P 		45.2
(3)
P 		30
B 34.2
(-2.9)
P 		33.7
(-3)
P 		35.9
(-2.4)
P 		56
(3)
P 		22
C 46.3
(1)
P 		23.9
(-3)
P 		35.7
(-0.9)
P 		57.1
(3)
P 		33
avr 35.2
(-0.7) 		24.3
(-3) 		31.8
(-1.4) 		52.8
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 17.8
(-3)
A 		57.9
(-0.3)
P 		32
(-2)
P 		41.1
(-1.4)
P 		67.4
(0.3)
P 		106.8
(3)
P 		89
B 25
(-3)
P 		46.5
(-2.2)
P 		39
(-2.5)
P 		30.5
(-2.8)
P 		116.3
(0.2)
P 		194.2
(3)
P 		169
C 24.8
(-2.9)
P 		48.5
(-2.1)
P 		27.2
(-2.8)
P 		22.4
(-3)
P 		62.1
(-1.6)
P 		196
(3)
P 		174
avr 22.5
(-3) 		51
(-1.8) 		32.7
(-2.6) 		31.3
(-2.6) 		81.9
(-0.5) 		165.7
(3) 		143
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175324_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20323
Sequence Type Exemplar sequence
Representative Public ID AU113125 NCBI
Target Description AU113125_rc /REP_DB=TREMBL Accession /GB=AU113125 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk703a9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059910(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059910 NCBI Caenorhabditis elegans Zip (yeast meiotic zipper) Homologous Protein family member (zhp-3) (zhp-3) mRNA, complete cds. 11/11 None
SNAP00000001150 ENSEMBL cdna:SNAP chromosome:CEL140:I:8537602:8539199:-1 11/11 None
GENEFINDER00000001151 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8537602:8539445:-1 11/11 None
K02B12.8 ENSEMBL cdna:known chromosome:CEL140:I:8537574:8539445:-1 gene:K02B12.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8537514-8538014(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol zhp-3
Ensembl K02B12.8
Entrez Gene 172644 Entrez gene
SwissProt P90905 EMBL-EBI
WormBase CE34201 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00037 Hypothetical protein K02B12.8 [Caenorhabditis elegans] ref|NP_492311.2| Zip (yeast meiotic zipper) Homologous Protein family member (zhp-3) [Caenorhabditis elegans] 0.0
blast CAB00037 Hypothetical protein K02B12.8 [Caenorhabditis elegans] ref|NP_492311.2| Zip (yeast meiotic zipper) Homologous Protein family member (zhp-3) [Caenorhabditis elegans] 1.0E-157
blast CAE67109 Hypothetical protein CBG12523 [Caenorhabditis briggsae] 1.0E-106
blast CAE67109 Hypothetical protein CBG12523 [Caenorhabditis briggsae] 1.0E-75
blast XP_549701 PREDICTED: similar to CG31053-PA [Canis familiaris] 1.0E-12
Sequence
Target Sequence 
>C. ELEGANS:175324_S_AT
agagcgaattcatttggagtgcatgatatttctaaaagagattcttcgctgcccacagga
ggcggttctgcgatacgtgttcatcatttcaaacagaattcacgaattactccaatagca
caaaatcgtcgaagtgcagctggattcgaccgtcagcagatacaagaaatgcgtcgaatc
tcatctcaacccggatacctcgcacaaaggaaaccgatcaatggtcggagcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGCGAATTCATTTGGAGTGCATG 175 71 23 Antisense
CTAAAAGAGATTCTTCGCTGCCCAC 604 225 54 Antisense
ACAGGAGGCGGTTCTGCGATACGTG 545 105 77 Antisense
GCGATACGTGTTCATCATTTCAAAC 262 291 92 Antisense
GAATTCACGAATTACTCCAATAGCA 121 325 118 Antisense
TACTCCAATAGCACAAAATCGTCGA 274 643 130 Antisense
AGTGCAGCTGGATTCGACCGTCAGC 93 61 155 Antisense
GATTCGACCGTCAGCAGATACAAGA 317 433 165 Antisense
AAATGCGTCGAATCTCATCTCAACC 319 119 189 Antisense
GGATACCTCGCACAAAGGAAACCGA 493 509 215 Antisense
GAAACCGATCAATGGTCGGAGCTTC 248 359 232 Antisense
Sequence Source Affymetrix Proprietary Database